DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab23 and Rab27

DIOPT Version :9

Sequence 1:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_726743.1 Gene:Rab27 / 31103 FlyBaseID:FBgn0025382 Length:236 Species:Drosophila melanogaster


Alignment Length:183 Identity:55/183 - (30%)
Similarity:92/183 - (50%) Gaps:19/183 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 VIVGNGGVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIEIDGED----VRIMLWDTAGQEEFDC 101
            :::|:.||||:.::.:|..|.|...:..|:|:||.|:::..:...    :.:.:|||||||.|..
  Fly    21 LVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFREKRLLYNSRGRRHRIHLQIWDTAGQERFRS 85

  Fly   102 ITKAYYRGAQASVLVFSTTDRASFDAIKDWKRKVENEC-NEIPTVIV-QNKIDLIEQAVVTADEV 164
            :|.|:||.|...:|:|..|...||....:|..::.... :|.|.|:: .||.||::..||:.|:|
  Fly    86 LTTAFYRDAMGFLLIFDLTSEKSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQV 150

  Fly   165 ETLAKLLNCRLIRTSVKEDINVASVFRYLATK---------CHQ----LMTQS 204
            ..|.:......|.||.....||......|..:         |::    |:|||
  Fly   151 AALCRRYRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLLTQS 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab23NP_649574.1 Ras 50..199 CDD:278499 47/163 (29%)
Rab23_like 50..197 CDD:133306 46/161 (29%)
Rab27NP_726743.1 P-loop_NTPase 19..187 CDD:304359 50/165 (30%)
RAB 20..186 CDD:197555 50/164 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454422
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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