DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab23 and Rab26

DIOPT Version :10

Sequence 1:NP_649574.1 Gene:Rab23 / 40701 FlyBaseID:FBgn0037364 Length:268 Species:Drosophila melanogaster
Sequence 2:XP_038941050.1 Gene:Rab26 / 171111 RGDID:620890 Length:328 Species:Rattus norvegicus


Alignment Length:249 Identity:60/249 - (24%)
Similarity:102/249 - (40%) Gaps:79/249 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 DDIELAIKVVIVGNGGVGKSSMIQRYCKGIF-TKDYKKTIGVDFLERQIEIDGEDVRIMLWDTAG 95
            |..::|.||::||:.||||:.::.|:..|.| ...:..|:|:||..:.:::||..|::.:|||||
  Rat    59 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAG 123

  Fly    96 QEEFDCITKAYYRGAQ--ASVLVFSTT-------------------DR--------ASFDAIKD- 130
            ||.|..:|.||||.|.  :|:|..|:|                   ||        ....|:.: 
  Rat   124 QERFRSVTHAYYRDAHGVSSLLSVSSTVAALRHHQQRFLRQHPGLVDRNPGICPAGRGAHAVGEQ 188

  Fly   131 ----------WKRKVENECNEIPTV--IVQNKIDLIEQAVVTADEVETLAKLLNCR--------- 174
                      |..:.   |:.:...  :...::|..::.||..::.|.|||:...|         
  Rat   189 GGNLGQSSPSWPHRA---CHGLALTKSLCLGQVDSTQERVVKREDGEKLAKVSQNREGEEGLLEI 250

  Fly   175 ------------------------LIRTSVKEDINVASVFRYLATKCHQLMTQS 204
                                    .:.||.|..:||...|..:|.:..|..|::
  Rat   251 VTLGPPPYAQHLAGSSYLQEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKA 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab23NP_649574.1 Rab23_like 50..197 CDD:133306 49/222 (22%)
Rab26XP_038941050.1 P-loop containing Nucleoside Triphosphate Hydrolases 65..326 CDD:476819 58/243 (24%)

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