DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED27 and R09F10.3

DIOPT Version :9

Sequence 1:NP_649569.1 Gene:MED27 / 40696 FlyBaseID:FBgn0037359 Length:293 Species:Drosophila melanogaster
Sequence 2:NP_509401.2 Gene:R09F10.3 / 181085 WormBaseID:WBGene00019987 Length:468 Species:Caenorhabditis elegans


Alignment Length:355 Identity:77/355 - (21%)
Similarity:134/355 - (37%) Gaps:91/355 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KLNSTLTAVKNLRSNVRLCFEHLAD---GTDGESGEESRNKFVN--DFQERFAAINSQIREVEQL 62
            :.|:.|..::.||:..    :|:|.   .|.|....|..:.|.|  ||......:.....:::.:
 Worm   139 RCNNCLFLIRKLRNKQ----DHIARLFLDTSGNDQAEFNSAFQNYKDFGLMVHEVMMFYDKLDHI 199

  Fly    63 INGLP--VPPTP-YSLGNTAYLAQET--SQDRQALYPQLVNSYKWMDKVHDHSFLAFNNLNQNTL 122
            ...||  :||.. .:|..|.|..:.|  ..:...|..::::...|    ::.:|..|..|:: .|
 Worm   200 ARHLPKALPPIDNINLMRTLYTQEHTMCHININNLLEKMIDCGNW----NEGNFQTFFYLSE-LL 259

  Fly   123 R--RSYNYCSQKRQRL-PFSSFNNDP-------DH-IDKLLSEINTPPHTSYRIFRP-------- 168
            |  .:..|.:...||| |.:.|::..       :| .:.|..||   .:.|..|:..        
 Worm   260 RCGSTRKYSNLPEQRLVPPAMFHSQATNSHAAFEHAFNGLRKEI---ANKSLGIYPKVLQRTTCS 321

  Fly   169 ------FG----------TNAVTIVTISNVMKAAIVFKGVLIEWVTVKGFDEPLEHDDLW----- 212
                  ||          |:...:.||    |..|:.:...||::.:..   |.|.   |     
 Worm   322 LIIEFLFGCGGAKPGEKNTDKEIVYTI----KFLIIERNGSIEYINIMA---PTED---WHMVND 376

  Fly   213 ---------AESRYEVFRKVQDHAHSAMLHFFSPTLPDL----AVKSYITWLNSHVKLFLEPCKR 264
                     |.|||||:|::...|:   :|.|:....:.    .:..:|:......:||...|:.
 Worm   377 YAIPTINPFAPSRYEVYRRLTKQAN---IHLFNCFAQNRWTAGTLFHFISLYGKFRELFTTKCRS 438

  Fly   265 CGKFV--VNGLPPTWRDLRT-LEPFHEDCR 291
            |.:.:  .|.|||...|:|. ....||.||
 Worm   439 CKQVLSRKNFLPPLIFDIRNPNNAAHEVCR 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED27NP_649569.1 Med27 209..287 CDD:288428 22/98 (22%)
R09F10.3NP_509401.2 Med27 382..464 CDD:288428 21/84 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D516659at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_107387
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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