DRSC/TRiP Functional Genomics Resources

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Protein Alignment elm and AT5G17470

DIOPT Version :9

Sequence 1:NP_001262295.1 Gene:elm / 40695 FlyBaseID:FBgn0037358 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_197249.1 Gene:AT5G17470 / 831613 AraportID:AT5G17470 Length:146 Species:Arabidopsis thaliana


Alignment Length:139 Identity:30/139 - (21%)
Similarity:60/139 - (43%) Gaps:14/139 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 FTSLDRNDCGTLSREDLMRIPELAINPLCERIVHSFFAE---SNDDRVNFRQFMNVLAHFRPLRD 96
            |..:|:|..|.:|.::...........:....:.:.|.|   ..|::::..::.:.|  ......
plant     7 FERVDKNKDGKISWDEFAEAIRAFSPSITSEEIDNMFREIDVDGDNQIDVAEYASCL--MLGGEG 69

  Fly    97 NKQSKLNSREEKLKFAFKMYDLDDDGVISRDELLSILHMMVGANISQDQLVSIAERTILEADLCC 161
            ||:.:    :..:|.||.:||:|.||.||..|:..:|     ..:.:.|.::.....:...|...
plant    70 NKEDE----DIVMKEAFDLYDIDGDGKISASEIHVVL-----KRLGEKQTIAECIAMVRAVDADG 125

  Fly   162 QGKISFEDF 170
            .|.:|||:|
plant   126 DGFVSFEEF 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elmNP_001262295.1 FRQ1 23..173 CDD:227455 30/139 (22%)
AT5G17470NP_197249.1 EF-hand_7 5..60 CDD:290234 8/52 (15%)
EFh 5..58 CDD:238008 8/50 (16%)
EF-hand_7 78..138 CDD:290234 19/62 (31%)
EFh 79..139 CDD:238008 19/61 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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