DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment elm and AT2G36180

DIOPT Version :9

Sequence 1:NP_001262295.1 Gene:elm / 40695 FlyBaseID:FBgn0037358 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_181160.1 Gene:AT2G36180 / 818190 AraportID:AT2G36180 Length:144 Species:Arabidopsis thaliana


Alignment Length:143 Identity:36/143 - (25%)
Similarity:67/143 - (46%) Gaps:21/143 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 FTSLDRNDCGTLSREDL---MRI--PELAINPLCER-IVHSFFAESNDDRVNFRQFMNVLAHFRP 93
            |.|:|:|..|.:..::.   :|:  |::....:.:. ||.....:...|.|.|...:.|      
plant     5 FESVDKNKDGKILWDEFAEAIRVFSPQITSEEIDKMFIVLDVDGDGQIDDVEFASCLMV------ 63

  Fly    94 LRDNKQSKLNSREE-KLKFAFKMYDLDDDGVISRDELLSILHMMVGANISQDQLVSIAERTILEA 157
               |...:.::.|| .:|.||.:||:|.||.||..|:..:|..:...:..:|.:|.:  :|:   
plant    64 ---NGGGEKDTEEEVVMKEAFDLYDMDGDGKISASEIHVVLKRLGEKHTMEDCVVMV--QTV--- 120

  Fly   158 DLCCQGKISFEDF 170
            |....|.::||:|
plant   121 DKDSDGFVNFEEF 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elmNP_001262295.1 FRQ1 23..173 CDD:227455 36/143 (25%)
AT2G36180NP_181160.1 EF-hand_7 1..58 CDD:290234 11/52 (21%)
EFh 3..58 CDD:238008 11/52 (21%)
EF-hand_7 77..137 CDD:290234 20/62 (32%)
EFh 78..137 CDD:238008 20/61 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.