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Protein Alignment elm and Kcnip2

DIOPT Version :9

Sequence 1:	NP_001262295.1	Gene:	elm / 40695	FlyBaseID:	FBgn0037358	Length:	189	Species:	Drosophila melanogaster
Sequence 2:	NP_064479.2	Gene:	Kcnip2 / 56817	RGDID:	70887	Length:	270	Species:	Rattus norvegicus

Alignment Length:	200	Identity:	48/200 - (24%)
Similarity:	93/200 - (46%)	Gaps:	52/200 - (26%)

- Green bases have known domain annotations that are detailed below.

  Fly     5 SSLFLRNEEIAQIQEETGFTPNQIERLYSRFTSLDRNDC--GTLSREDLMRIPELAINPLCERIV 67
            |::..|.|.:.|:||:|.||..:::.||..|    :|:|  |.::.|:.            ::|.
  Rat    84 STVCHRPEGLEQLQEQTKFTRRELQVLYRGF----KNECPSGIVNEENF------------KQIY 132

  Fly    68 HSFFAE----------------SNDDRVNFRQFMNVLAHFRPLRDNKQSKLNSREEKLKFAFKMY 116
            ..||.:                ::|..|:|..|:..|:..  ||       .:.:::|.:||.:|
  Rat   133 SQFFPQGDSSNYATFLFNAFDTNHDGSVSFEDFVAGLSVI--LR-------GTIDDRLSWAFNLY 188

  Fly   117 DLDDDGVISRDELLSI---LHMMVGANISQDQLVSIAERTILEA-----DLCCQGKISFEDFCKA 173
            ||:.||.|:::|:|.|   ::.|:| ..:...|...|.|..:|:     |....|.::.|:|.::
  Rat   189 DLNKDGCITKEEMLDIMKSIYDMMG-KYTYPALREEAPREHVESFFQKMDRNKDGVVTIEEFIES 252

  Fly   174 LDRTD 178
            ..:.:
  Rat   253 CQQDE 257

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.