DRSC/TRiP Functional Genomics Resources

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Protein Alignment elm and cib3

DIOPT Version :9

Sequence 1:NP_001262295.1 Gene:elm / 40695 FlyBaseID:FBgn0037358 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_001011260.1 Gene:cib3 / 496710 XenbaseID:XB-GENE-5787572 Length:207 Species:Xenopus tropicalis


Alignment Length:200 Identity:55/200 - (27%)
Similarity:100/200 - (50%) Gaps:25/200 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNKSSLFLRNEEIAQIQEETGFTPNQIERLYSRFTSL----------DRNDCGTLSREDLMRIP 55
            ||||.::|.. |::...|:.|.||..:|.||::|:..|          ::.|. .:..|.:..:|
 Frog     1 MGNKQTIFTA-EQLDTYQDCTFFTRKEILRLFNRYRDLAPQLVPDDYTNKPDV-KIPYELIGSMP 63

  Fly    56 ELAINPLCERIVHSFFAESNDDRVNFRQFMNVLAHFRPLRDNKQSKLNSREEKLKFAFKMYDLDD 120
            ||..||..:||. ..|:|..|..:....|:::.:..        |::..::.|..:|||:||.::
 Frog    64 ELKDNPFRQRIA-EVFSEDGDGNMTLDDFLDMFSVL--------SEMAPKDLKAFYAFKIYDFNN 119

  Fly   121 DGVISRDELLSILHMMVGANISQDQLVSIAERTILEADLCCQGKISFEDF----CKALDRTDVDQ 181
            |..|.:.:|...|:.:....::.:::..:.|:.|.|||:...||:|.|||    .:|.|...||.
 Frog   120 DDYICKSDLEKTLNKLTRNELTPEEVCLVCEKVIDEADVDNDGKLSLEDFQHMIVRAPDFLRVDW 184

  Fly   182 KMSIR 186
            ::..|
 Frog   185 QVPRR 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elmNP_001262295.1 FRQ1 23..173 CDD:227455 42/163 (26%)
cib3NP_001011260.1 FRQ1 20..178 CDD:227455 44/167 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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