DRSC/TRiP Functional Genomics Resources

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Protein Alignment elm and Chp2

DIOPT Version :9

Sequence 1:NP_001262295.1 Gene:elm / 40695 FlyBaseID:FBgn0037358 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_038934165.1 Gene:Chp2 / 308965 RGDID:727796 Length:252 Species:Rattus norvegicus


Alignment Length:196 Identity:96/196 - (48%)
Similarity:132/196 - (67%) Gaps:9/196 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNKSSLFLRNEEIAQIQEETGFTPNQIERLYSRFTSLDRNDCGTLSREDLMRIPELAINPLCER 65
            ||::||......::.||:.||||:...:.|||.||.:|||.:.|.|||.||.:|..||:|||.:|
  Rat    57 MGSRSSHVALIPDVDQIRRETGFSQASLLRLYHRFQALDREEKGFLSRLDLQQIGALAVNPLGDR 121

  Fly    66 IVHSFFAESNDDRVNFRQFMNVLAHFRP-------LRDNKQSK-LNSREEKLKFAFKMYDLDDDG 122
            |:.||| .:...||.|..|..|||:|||       |||.||.: ||||..||:|||::||||.||
  Rat   122 IIDSFF-PNGSQRVYFAGFARVLAYFRPIDEDDATLRDPKQPEPLNSRMNKLRFAFQLYDLDRDG 185

  Fly   123 VISRDELLSILHMMVGANISQDQLVSIAERTILEADLCCQGKISFEDFCKALDRTDVDQKMSIRF 187
            .|||:|:|.:|.:|||..::.:||.||.:||:.|||....|.:||.:|.|:|::.:::||||||.
  Rat   186 KISRNEMLQVLRLMVGVQVTDEQLESITDRTVQEADEDGDGAVSFLEFAKSLEKMNIEQKMSIRI 250

  Fly   188 L 188
            |
  Rat   251 L 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elmNP_001262295.1 FRQ1 23..173 CDD:227455 78/157 (50%)
Chp2XP_038934165.1 FRQ1 79..235 CDD:227455 78/156 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350475
Domainoid 1 1.000 78 1.000 Domainoid score I8569
eggNOG 1 0.900 - - E2759_KOG0034
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 228 1.000 Inparanoid score I3383
OMA 1 1.010 - - QHG53747
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 1 1.000 - - FOG0000640
OrthoInspector 1 1.000 - - otm46375
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46002
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2469
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.870

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