DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment elm and chpf-1

DIOPT Version :9

Sequence 1:NP_001262295.1 Gene:elm / 40695 FlyBaseID:FBgn0037358 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_001379127.1 Gene:chpf-1 / 179415 WormBaseID:WBGene00014109 Length:195 Species:Caenorhabditis elegans


Alignment Length:195 Identity:113/195 - (57%)
Similarity:148/195 - (75%) Gaps:6/195 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNKSSLFLRNEEIAQIQEETGFTPNQIERLYSRFTSLDRNDCGTLSREDLMRIPELAINPLCER 65
            |||.|||.||:|||.:|..||.|..|||.||||||.|||:...|.|||:|.:.:||||:|||.:|
 Worm     1 MGNSSSLMLRDEEIEEIMSETEFNRNQIVRLYSRFLSLDKKGQGFLSRDDFLNVPELAVNPLGDR 65

  Fly    66 IVHSFF--AESNDD----RVNFRQFMNVLAHFRPLRDNKQSKLNSREEKLKFAFKMYDLDDDGVI 124
            ||.:||  |.||.|    ::|||||:.:||||:|:...|::.||||::||.||||||||:.:..|
 Worm    66 IVDAFFTLASSNGDNEEQQLNFRQFVRILAHFQPISRVKKNALNSRKDKLLFAFKMYDLNKNDYI 130

  Fly   125 SRDELLSILHMMVGANISQDQLVSIAERTILEADLCCQGKISFEDFCKALDRTDVDQKMSIRFLN 189
            :|:|...||:.||||||:.|||..||:|||.|||....|||||::||:|:::||:::||||||||
 Worm   131 TREEFKVILNSMVGANITSDQLDKIADRTIEEADADRDGKISFDEFCRAMEKTDIEEKMSIRFLN 195

  Fly   190  189
             Worm   196  195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elmNP_001262295.1 FRQ1 23..173 CDD:227455 88/155 (57%)
chpf-1NP_001379127.1 FRQ1 14..182 CDD:227455 93/167 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166876
Domainoid 1 1.000 118 1.000 Domainoid score I3645
eggNOG 1 0.900 - - E2759_KOG0034
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5235
Inparanoid 1 1.050 217 1.000 Inparanoid score I2313
Isobase 1 0.950 - 0 Normalized mean entropy S676
OMA 1 1.010 - - QHG53747
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 1 1.000 - - FOG0000640
OrthoInspector 1 1.000 - - otm14478
orthoMCL 1 0.900 - - OOG6_105864
Panther 1 1.100 - - LDO PTHR46002
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3958
SonicParanoid 1 1.000 - - X2469
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

Return to query results.
Submit another query.