DRSC/TRiP Functional Genomics Resources

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Protein Alignment elm and kcnip1

DIOPT Version :9

Sequence 1:NP_001262295.1 Gene:elm / 40695 FlyBaseID:FBgn0037358 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_002937770.1 Gene:kcnip1 / 100497014 XenbaseID:XB-GENE-973728 Length:230 Species:Xenopus tropicalis


Alignment Length:193 Identity:41/193 - (21%)
Similarity:79/193 - (40%) Gaps:48/193 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RNEEIAQIQEETGFTPNQIERLYSRFTSLDRNDCGTLSREDLMRIPELAINPLCERIVHSFFAES 74
            |.|.:.|::.:|.|...:::.||..|    :|:|           |...:|....::::|.|...
 Frog    49 RPEGLEQLEAQTNFNKRELQVLYRGF----KNEC-----------PSGVVNEDTFKLIYSQFFPH 98

  Fly    75 ND-----------------DRVNFRQFMNVLAHFRPLRDNKQSKLNSREEKLKFAFKMYDLDDDG 122
            .|                 ..|.|..|:..|:..  ||       .|..|||::.|.:||::.||
 Frog    99 GDASMYAHYLFNAFDAAQSGSVKFEDFVAALSVL--LR-------GSIHEKLRWTFNLYDINKDG 154

  Fly   123 VISRDELLSI---LHMMVGAN----ISQDQLVSIAERTILEADLCCQGKISFEDFCKALDRTD 178
            .|:::|::.|   ::.|:|..    :.:|......|....:.|....|.::.::|.::....|
 Frog   155 NINKEEMMDIVKAIYDMMGKYTYPVLKEDAPKQHVEVFFQKMDKNKDGVVTLDEFIESCQEDD 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
elmNP_001262295.1 FRQ1 23..173 CDD:227455 36/173 (21%)
kcnip1XP_002937770.1 FRQ1 53..219 CDD:227455 39/189 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1271942at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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