DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sec23 and AT1G05520

DIOPT Version :9

Sequence 1:NP_001246932.1 Gene:Sec23 / 40694 FlyBaseID:FBgn0262125 Length:781 Species:Drosophila melanogaster
Sequence 2:NP_563741.1 Gene:AT1G05520 / 837054 AraportID:AT1G05520 Length:783 Species:Arabidopsis thaliana


Alignment Length:794 Identity:379/794 - (47%)
Similarity:511/794 - (64%) Gaps:46/794 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EDRDGVRLTWNVWPSSRIEASRLVVPLACLYQPLKERPDLPPIQYEPVLCTRSNCRAILNPLCQV 76
            |..||||:||||||.:::|||:.|:|:|....|::...|:|.::|.|:.|  ..|.|.|||..:|
plant    10 EGIDGVRMTWNVWPRTKVEASKCVIPVAACISPIRYHRDIPSVEYAPLRC--RICTAALNPFARV 72

  Fly    77 DYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYTITR--APT------------- 126
            |:.||:|:|..|||||.|||.|..:||.:.|.||.|.::|:|||:..  .||             
plant    73 DFLAKIWICPICFQRNHFPPHYHVMSETNVPCELYPQYTTVEYTLPNPSQPTGVGNFDQTGAVSG 137

  Fly   127 --MPPVFIFLVDTCMDEEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGAEGCSKSYVF 189
              .|.||:|::||||.|||....|.:|:.::.|||.|||||.::||....|||||....:|.|||
plant   138 QPSPSVFVFVLDTCMIEEEFGYAKSALKQAIGLLPENALVGFVSFGTQAHVHELGFSDLTKVYVF 202

  Fly   190 RGTKDLTAKQVQDMLGIGRGAAPGPQQQQHLPGQPAG----AAAPVPPAHRFLQPIGQCDAALGD 250
            ||.|:::..||.:.||:|......|     :.|.|.|    |.......:|||.|...|:..:..
plant   203 RGDKEISKDQVLEQLGLGASGRRNP-----VGGFPMGRDNSANFGYSGVNRFLLPASDCEFTIDL 262

  Fly   251 LLSELQRDPWPVPQGKRYLRSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELK 315
            ||.|||.|.|||..|:|..|.||.|:|:|.|||...:|.||.||:..:|||||:|||.:|..:|.
plant   263 LLEELQTDQWPVQAGRRQSRCTGVAISVATGLLGACFPGTGARIVALIGGPCSEGPGTIVSKDLS 327

  Fly   316 HPIRSHHDIHKDNVRFMKKAIKHYDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNSTGGHMV 380
            .|:|||.|:.||...|.|||.|.|||||.:....||.:|:::.||||.|:.|||.....|||.:|
plant   328 EPLRSHKDLDKDAAPFYKKAEKFYDALANQLVNQGHVLDLFASALDQVGVAEMKAAVERTGGLVV 392

  Fly   381 MGDSFNSSLFKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKISGGIGSCVSLNVKSPSVSDVE 445
            :.:||..|:||.:|:||| .||...|.:.||.|||:.||:::||.|.||.|.||..|.|||:|..
plant   393 LSESFGHSVFKDSFKRVF-EDGEESLGLCFNGTLEICCSKDIKIQGIIGPCASLQKKGPSVADTV 456

  Fly   446 IGMGNTVQWKLCTLNPSSTVAYFFEV--VNQHAAPIPQGGRGCIQFITQYQHPSGQRRIRVTTLA 508
            ||.|||.|||:|.|:..:.:..||::  .:|.:||.....:..:||:|.||:..|:...||||:.
plant   457 IGEGNTTQWKMCGLDKRTCLTVFFDLSSSDQSSAPGGVNNQLYLQFMTSYQNSKGKTLQRVTTVT 521

  Fly   509 RNWADATSNVHHISAGFDQEAAAVLMARMVVYRAETDEGPDILRWVDRQLIRLCQKFGEYSKDDP 573
            |.|.|...:...:..|||||.|||::||:...:.||:||.|..||:||.|||||.|||:|.||||
plant   522 RQWVDTGLSTEELVQGFDQETAAVVVARLASLKMETEEGFDATRWLDRNLIRLCSKFGDYRKDDP 586

  Fly   574 NSFRLSQNFSLFPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFNG 638
            .||.|:.||||||||.::||||||:||||||||||.:.|.:|.||:::.:.:||||.|.:||||.
plant   587 ASFTLNPNFSLFPQFTFNLRRSQFVQVFNNSPDETAYNRMLLNRENISNAAVMIQPSLTTYSFNS 651

  Fly   639 PPEPVLLDTASIQADRILLMDTFFQILIYHGETIAQWRALKYQDMPEYENFKQLLQAPVDDAQEI 703
            .|:|.|||.|||.||||||:|::..::::||.||||||.|.||:.||::.|.|||:||.:|||.|
plant   652 LPQPALLDVASIGADRILLLDSYISVVVFHGMTIAQWRNLGYQNQPEHQAFAQLLEAPQEDAQMI 716

  Fly   704 LQTRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNN---MYAYGQAPIGQVTVDGGAPVLTDDVSL 765
            ::.|||:||.:..:..||||||||:|:|||.|:||   |.|            |...:.||||||
plant   717 IRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNASEMNA------------GSDIIFTDDVSL 769

  Fly   766 QLFMEHLKKLAVST 779
            |:|.:||:||||.:
plant   770 QVFFQHLQKLAVQS 783

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec23NP_001246932.1 PLN00162 12..779 CDD:215083 379/792 (48%)
zf-Sec23_Sec24 58..97 CDD:282641 20/38 (53%)
Sec23-like 126..396 CDD:238755 124/288 (43%)
Sec23_BS 409..512 CDD:285301 46/104 (44%)
Sec23_helical 530..623 CDD:282646 58/92 (63%)
Sec23_C 618..738 CDD:200443 66/119 (55%)
AT1G05520NP_563741.1 PLN00162 4..783 CDD:215083 379/792 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 259 1.000 Domainoid score I490
eggNOG 1 0.900 - - E1_COG5047
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 742 1.000 Inparanoid score I111
OMA 1 1.010 - - QHG53648
OrthoDB 1 1.010 - - D270617at2759
OrthoFinder 1 1.000 - - FOG0001309
OrthoInspector 1 1.000 - - otm2812
orthoMCL 1 0.900 - - OOG6_100992
Panther 1 1.100 - - O PTHR11141
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X910
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.