DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sec23 and AT4G14160

DIOPT Version :9

Sequence 1:NP_001246932.1 Gene:Sec23 / 40694 FlyBaseID:FBgn0262125 Length:781 Species:Drosophila melanogaster
Sequence 2:NP_849541.2 Gene:AT4G14160 / 827055 AraportID:AT4G14160 Length:773 Species:Arabidopsis thaliana


Alignment Length:776 Identity:374/776 - (48%)
Similarity:510/776 - (65%) Gaps:26/776 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EDRDGVRLTWNVWPSSRIEASRLVVPLACLYQPLKERPDLPPIQYEPVLCTRSNCRAILNPLCQV 76
            |..||||:|||:||.:::|||:.|:|||....|::..|.:..:.|.|:.|  ..|:|:||...:|
plant    16 EGIDGVRMTWNLWPRTKVEASKCVIPLAASISPIRRHPLILDLPYAPLDC--KTCKALLNAFARV 78

  Fly    77 DYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYTITRAPTM---PPVFIFLVDTC 138
            |:.|..|||.||:.||.||..|.:|||.:.|.||.|.::|:|||:...|:.   ||||:|::|||
plant    79 DFAAMNWVCPFCYHRNHFPSHYHSISEINLPGELYPQYTTVEYTLPPDPSRVPPPPVFVFVLDTC 143

  Fly   139 MDEEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGAEGCSKSYVFRGTKDLTAKQVQDM 203
            |.||||...|.:|:.::.|||.|||||.::||....|||||....||.:||:|.|::|..|:.|.
plant   144 MIEEELGYAKSALKQAIGLLPENALVGFVSFGTQAHVHELGFSEMSKVFVFKGNKEVTKDQILDQ 208

  Fly   204 LGIGRGAAPGPQQQQHLPGQPAGAAAPVPPAHRFLQPIGQCDAALGDLLSELQRDPWPVPQGKRY 268
            ||:|..:...|........|....::.|   .|||.|..:|:..|..||.|||.|.|||..|.|.
plant   209 LGLGSSSRRAPTSGFSKGAQNGFQSSGV---DRFLLPASECEYTLDLLLDELQSDQWPVQPGHRP 270

  Fly   269 LRSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDIHKDNVRFMK 333
            .|.||.|||:|.|||....|.||.||:..|||||::|||.::..:|..|:|||.|:.||...:.|
plant   271 QRCTGVALSVAAGLLGACLPGTGARIVALVGGPCTEGPGTIISKDLSDPVRSHKDLDKDAAPYYK 335

  Fly   334 KAIKHYDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNSTGGHMVMGDSFNSSLFKQTFQRVF 398
            ||:|.||::|.:....||.:|:::.||||.|:.|||....||||.:|:.:||..|:||.:|:|:|
plant   336 KAVKFYDSIAKQLVAQGHVLDLFASALDQVGVAEMKVAVESTGGLVVLSESFGHSVFKDSFKRMF 400

  Fly   399 ARDGRNDLKMAFNATLEVKCSRELKISGGIGSCVSLNVKSPSVSDVEIGMGNTVQWKLCTLNPSS 463
             .||.:.|.:.||.|||:.||:::||.|.||.|.||..|.|:|:|..||.|||..||||.|:.|:
plant   401 -EDGEHSLGLCFNGTLEINCSKDIKIQGVIGPCSSLEKKGPNVADTVIGEGNTSAWKLCGLDKST 464

  Fly   464 TVAYFFEVVNQ-HAAPIPQGGRGCIQFITQYQHPSGQRRIRVTTLARNWAD-ATSNVHHISAGFD 526
            .:..||::.:. ..||.....:..:||||:||:..|:...|||||.|.|.| |.|...::..|||
plant   465 CLTVFFDLSSTGSTAPGALNQQLYLQFITRYQNSEGKSLARVTTLTRQWVDTAVSTEVNLVQGFD 529

  Fly   527 QEAAAVLMARMVVYRAETDEGPDILRWVDRQLIRLCQKFGEYSKDDPNSFRLSQNFSLFPQFMYH 591
            ||.|||:|||:...:.||:||.|..||:||.|||||.|||||.||||.||.|....:||||||::
plant   530 QETAAVVMARLTSLKMETEEGFDATRWLDRTLIRLCSKFGEYRKDDPTSFTLKPYLTLFPQFMFN 594

  Fly   592 LRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTASIQADRIL 656
            ||||||:||||||||||.::|.:|.||:::.:::||||.|.|||||..|:..|||.|||.||:||
plant   595 LRRSQFVQVFNNSPDETAYFRMLLNRENISNAIVMIQPSLTSYSFNSGPQAALLDVASIAADKIL 659

  Fly   657 LMDTFFQILIYHGETIAQWRALKYQDMPEYENFKQLLQAPVDDAQEILQTRFPMPRYIDTEHGGS 721
            |:|.:|.::::||.||:|||.:.|...||:|.|.||||||.:|:|.:::.|||:||.:..:..||
plant   660 LLDAYFSVVVFHGMTISQWRNMGYHHQPEHEAFAQLLQAPQEDSQMLVRERFPVPRLVVCDQHGS 724

  Fly   722 QARFLLSKVNPSQTHNN---MYAYGQAPIGQVTVDGGAPVLTDDVSLQLFMEHLKKLAVST 779
            ||||||:|:|||.|:||   |.|            |...:.|||||||:|:|||:||||.:
plant   725 QARFLLAKLNPSATYNNANEMSA------------GSDIIFTDDVSLQVFIEHLQKLAVQS 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec23NP_001246932.1 PLN00162 12..779 CDD:215083 374/774 (48%)
zf-Sec23_Sec24 58..97 CDD:282641 18/38 (47%)
Sec23-like 126..396 CDD:238755 122/272 (45%)
Sec23_BS 409..512 CDD:285301 47/103 (46%)
Sec23_helical 530..623 CDD:282646 58/92 (63%)
Sec23_C 618..738 CDD:200443 63/119 (53%)
AT4G14160NP_849541.2 PLN00162 11..773 CDD:215083 374/774 (48%)
zf-Sec23_Sec24 62..99 CDD:282641 18/38 (47%)
Sec23-like 140..398 CDD:238755 117/260 (45%)
Sec23_BS 410..514 CDD:285301 47/103 (46%)
Sec23_helical 533..625 CDD:282646 58/91 (64%)
Sec23_C 621..741 CDD:200443 63/119 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 259 1.000 Domainoid score I490
eggNOG 1 0.900 - - E1_COG5047
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 742 1.000 Inparanoid score I111
OMA 1 1.010 - - QHG53648
OrthoDB 1 1.010 - - D270617at2759
OrthoFinder 1 1.000 - - FOG0001309
OrthoInspector 1 1.000 - - otm2812
orthoMCL 1 0.900 - - OOG6_100992
Panther 1 1.100 - - O PTHR11141
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X910
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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