DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sec23 and AT3G23660

DIOPT Version :9

Sequence 1:NP_001246932.1 Gene:Sec23 / 40694 FlyBaseID:FBgn0262125 Length:781 Species:Drosophila melanogaster
Sequence 2:NP_001189956.1 Gene:AT3G23660 / 821946 AraportID:AT3G23660 Length:791 Species:Arabidopsis thaliana


Alignment Length:810 Identity:381/810 - (47%)
Similarity:511/810 - (63%) Gaps:70/810 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EDRDGVRLTWNVWPSSRIEASRLVVPLACLYQPLKERPDLPPIQYEPVLCTRSNCRAILNPLCQV 76
            |..||||:||||||.|:.|||:.|:|||....|::...|:|.:.|.|:.|  ..|.|.||...||
plant    10 EGIDGVRMTWNVWPHSKAEASKCVIPLAACISPIRRHADIPTLPYAPLRC--RTCSAALNAYAQV 72

  Fly    77 DYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYTITRAPTM--------PPVFIF 133
            |:.||||:|.||:|||.|||.|..|||.:.|.||.|.::|:|||:  .|.:        ||||:|
plant    73 DFTAKLWICPFCYQRNHFPPHYHVISETNLPGELYPQYTTVEYTL--PPPVANGEGLVDPPVFVF 135

  Fly   134 LVDTCMDEEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGAEGCSKSYVFRGTKDLTAK 198
            ::||||.|||||..|.:|:.::.|||.|||||.::||....|||||....||.:||:|.|:::..
plant   136 VLDTCMIEEELDFAKSALKQAIGLLPENALVGFVSFGTQAHVHELGFSEMSKVFVFKGDKEISKD 200

  Fly   199 QVQDMLGIG----RGAAPGPQQQQHLPGQPAGAAAPVPPAHRFLQPIGQCDAALGDLLSELQRDP 259
            |:.|.||:|    ||.:.|||.     |.|:..      .:|||.|..:|:..|..||.|||.|.
plant   201 QILDQLGLGGSSRRGGSKGPQN-----GFPSSG------LNRFLLPASECEFTLNSLLDELQSDQ 254

  Fly   260 WPVPQGKRYLRSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDI 324
            |||..|.|..|.||.|||:|.|||....|.||.||:..:||||::|||.:|..:|..|:|||.|:
plant   255 WPVKPGHRSQRCTGVALSVAAGLLGACLPGTGARIVALIGGPCTEGPGTIVSKDLSDPVRSHKDL 319

  Fly   325 HKDNVRFMKKAIKHYDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNSTGGHMVMGDSFNSSL 389
            .||...:.|||:|.||::|.:..|.||.:|:::.||||.|:.|||.....|||.:|:.:||..|:
plant   320 DKDAAPYYKKAVKFYDSIAKQLVTQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLSESFGHSV 384

  Fly   390 FKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKISGGIGSCVSLNVKSPSVSDVEIGMGNTVQW 454
            ||.:|:||| .||...|.:.||.|||:.||:::||.|.||.|.||..|..||:|..||.|||..|
plant   385 FKDSFKRVF-EDGDQALGLCFNGTLEICCSQDIKIQGAIGPCSSLEKKGASVADTVIGEGNTSAW 448

  Fly   455 KLCTLNPSSTVAYFFEV----VNQHAAPIPQGGRGCIQFITQYQHPSGQRRIRVTTLARNWADAT 515
            :||.|:.::.:..||::    .|...|..||   ..:||:|.||:|.||..:||||:.|.|.|:.
plant   449 RLCGLDKTTCLTIFFDISSSGSNTPGAANPQ---FYLQFLTSYQNPEGQTLLRVTTVCRQWIDSA 510

  Fly   516 SNVHHISAGFDQEAAAVLMARMVVYRAETD--------------------------EGPDILRWV 554
            .:...:..|||||.|||:|||:...:.|::                          ||.|..||:
plant   511 VSSEELVQGFDQETAAVVMARLASLKMESEVRHSRKLQFGVPRISNAYLFIQKRFKEGFDATRWL 575

  Fly   555 DRQLIRLCQKFGEYSKDDPNSFRLSQNFSLFPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMRED 619
            ||.|||||.|||:|.||||.||.|:..|||||||:::||||||:||||||||||.::..:|.||:
plant   576 DRNLIRLCSKFGDYRKDDPASFTLNPYFSLFPQFIFNLRRSQFVQVFNNSPDETAYFCMLLNREN 640

  Fly   620 LTQSLIMIQPILYSYSFNGPPEPVLLDTASIQADRILLMDTFFQILIYHGETIAQWRALKYQDMP 684
            ::.:.:||||.|.:||||.|.||.|||.|||.||||||:|.:|.::::||.||||||.:.|...|
plant   641 ISNATVMIQPSLTTYSFNSPAEPALLDVASIAADRILLLDAYFSVVVFHGMTIAQWRNMGYHHQP 705

  Fly   685 EYENFKQLLQAPVDDAQEILQTRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAYGQAPIGQ 749
            |::.|.:|||||.:|:|.|::.|||:||.:..:..||||||||:|:|||.|:||         ..
plant   706 EHQAFAELLQAPQEDSQMIVRERFPVPRLVVCDQHGSQARFLLAKLNPSATYNN---------AN 761

  Fly   750 VTVDGGAPVLTDDVSLQLFMEHLKKLAVST 779
            ....|...:.|||||||:|.|||:||.|.:
plant   762 EMSTGSDVIFTDDVSLQVFFEHLQKLVVQS 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec23NP_001246932.1 PLN00162 12..779 CDD:215083 381/808 (47%)
zf-Sec23_Sec24 58..97 CDD:282641 21/38 (55%)
Sec23-like 126..396 CDD:238755 126/281 (45%)
Sec23_BS 409..512 CDD:285301 47/106 (44%)
Sec23_helical 530..623 CDD:282646 56/118 (47%)
Sec23_C 618..738 CDD:200443 65/119 (55%)
AT3G23660NP_001189956.1 PLN00162 7..791 CDD:215083 381/808 (47%)
zf-Sec23_Sec24 56..93 CDD:282641 21/38 (55%)
Sec23-like 130..391 CDD:238755 126/271 (46%)
Sec23_BS 403..506 CDD:285301 47/105 (45%)
Sec23_helical 525..643 CDD:282646 56/117 (48%)
Sec23_C 639..759 CDD:200443 65/119 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 259 1.000 Domainoid score I490
eggNOG 1 0.900 - - E1_COG5047
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 742 1.000 Inparanoid score I111
OMA 1 1.010 - - QHG53648
OrthoDB 1 1.010 - - D270617at2759
OrthoFinder 1 1.000 - - FOG0001309
OrthoInspector 1 1.000 - - otm2812
orthoMCL 1 0.900 - - OOG6_100992
Panther 1 1.100 - - LDO PTHR11141
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X910
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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