DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Sec23 and Sec23b

DIOPT Version :9

Sequence 1:	NP_001246932.1	Gene:	Sec23 / 40694	FlyBaseID:	FBgn0262125	Length:	781	Species:	Drosophila melanogaster
Sequence 2:	NP_001264164.1	Gene:	Sec23b / 362226	RGDID:	1310699	Length:	767	Species:	Rattus norvegicus

Alignment Length:	781	Identity:	578/781 - (74%)
Similarity:	660/781 - (84%)	Gaps:	14/781 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MTTYEEFIQQNEDRDGVRLTWNVWPSSRIEASRLVVPLACLYQPLKERPDLPPIQYEPVLCTRSN 65
            |.||.|||||||:|||||.:||||||||:||:|:|||||||..||||||||||:|||||||:|..
  Rat     1 MATYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPLACLLTPLKERPDLPPVQYEPVLCSRPT 65

  Fly    66 CRAILNPLCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYTITRAPTMPPV 130
            |:||||||||||||||||.||||||||.|||.||.|||.:|||||:|.||||||.|.|....|.:
  Rat    66 CKAILNPLCQVDYRAKLWACNFCFQRNQFPPAYAGISEVNQPAELMPQFSTIEYMIQRGARSPLI 130

  Fly   131 FIFLVDTCMDEEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGAEGCSKSYVFRGTKDL 195
            |:::||||::|::|.|||:||||||||||.:|||||||||:|:|||||..||.||||||||||||
  Rat   131 FLYVVDTCLEEDDLQALKESLQMSLSLLPPDALVGLITFGRMVQVHELSCEGISKSYVFRGTKDL 195

  Fly   196 TAKQVQDMLGIGRGAAPGPQQQQHLPGQPAGAAAPVPPAHRFLQPIGQCDAALGDLLSELQRDPW 260
            ||||:|:|||:.:.|.|   .||..||||...:|   .:.|||||:.:.|..|.|||.|||||||
  Rat   196 TAKQIQEMLGLTKSAMP---VQQVRPGQPQEQSA---VSSRFLQPVHKIDMNLTDLLGELQRDPW 254

  Fly   261 PVPQGKRYLRSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDIH 325
            ||.||||.|||||.||||||||||.|:||||.|||.|.|||.:||||.||.||||.||||.|||.
  Rat   255 PVTQGKRPLRSTGVALSIAVGLLEGTFPNTGARIMLFTGGPPTQGPGMVVGDELKTPIRSWHDIE 319

  Fly   326 KDNVRFMKKAIKHYDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNSTGGHMVMGDSFNSSLF 390
            |||.||||||.|||:.||.|.|||||.:|||:||||||||||||...|.|||.||||||||:|||
  Rat   320 KDNARFMKKATKHYEMLANRTATNGHCIDIYACALDQTGLLEMKCCPNLTGGLMVMGDSFNTSLF 384

  Fly   391 KQTFQRVFARDGRNDLKMAFNATLEVKCSRELKISGGIGSCVSLNVKSPSVSDVEIGMGNTVQWK 455
            ||||||:|::|...|.:|||.||||||.||||||:|.||.|||||||.|.||:.|:|:|.|.|||
  Rat   385 KQTFQRIFSKDFNGDFRMAFGATLEVKTSRELKIAGAIGPCVSLNVKGPCVSENELGVGGTSQWK 449

  Fly   456 LCTLNPSSTVAYFFEVVNQHAAPIPQGGRGCIQFITQYQHPSGQRRIRVTTLARNWADATSNVHH 520
            :|.|:||||:..:|||||||.|||||||||.|||:|||||.|.|:||||||:|||||||.|.:.|
  Rat   450 ICGLDPSSTLGIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSTQKRIRVTTIARNWADAQSQLRH 514

  Fly   521 ISAGFDQEAAAVLMARMVVYRAETDEGPDILRWVDRQLIRLCQKFGEYSKDDPNSFRLSQNFSLF 585
            |.|.||||||||||||:.|:|||::||||:|||:||||||||||||:|:|:||.|||||.:|||:
  Rat   515 IEAAFDQEAAAVLMARLGVFRAESEEGPDVLRWLDRQLIRLCQKFGQYNKEDPTSFRLSDSFSLY 579

  Fly   586 PQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTASI 650
            ||||:|||||.|||||||||||:::|||...|:||||||||||||||||||:|||||||||::||
  Rat   580 PQFMFHLRRSPFLQVFNNSPDESSYYRHHFARQDLTQSLIMIQPILYSYSFHGPPEPVLLDSSSI 644

  Fly   651 QADRILLMDTFFQILIYHGETIAQWRALKYQDMPEYENFKQLLQAPVDDAQEILQTRFPMPRYID 715
            .|||||||||||||:||.||||||||...|||||||||||.|||||:||||||||.||||||||:
  Rat   645 LADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPEYENFKHLLQAPLDDAQEILQARFPMPRYIN 709

  Fly   716 TEHGGSQARFLLSKVNPSQTHNNMYAYGQAPIGQVTVDGGAPVLTDDVSLQLFMEHLKKLAVSTT 780
            |||||||||||||||||||||||:||:||        :.|||:||||||||:||:||||||||:.
  Rat   710 TEHGGSQARFLLSKVNPSQTHNNLYAWGQ--------ETGAPILTDDVSLQVFMDHLKKLAVSSA 766

  Fly   781 T 781
            :
  Rat   767 S 767

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Sec23	NP_001246932.1	PLN00162	12..779	CDD:215083	568/766 (74%)
		zf-Sec23_Sec24	58..97	CDD:282641	32/38 (84%)
		Sec23-like	126..396	CDD:238755	188/269 (70%)
		Sec23_BS	409..512	CDD:285301	75/102 (74%)
		Sec23_helical	530..623	CDD:282646	69/92 (75%)
		Sec23_C	618..738	CDD:200443	105/119 (88%)
Sec23b	NP_001264164.1	PLN00162	12..765	CDD:215083	568/766 (74%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C166345723
Domainoid	1	1.000	376	1.000	Domainoid score	I828
eggNOG	1	0.900	-	-		E1_COG5047
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	1189	1.000	Inparanoid score	I182
OMA	1	1.010	-	-		QHG53648
OrthoDB	1	1.010	-	-		D155701at33208
OrthoFinder	1	1.000	-	-		FOG0001309
OrthoInspector	1	1.000	-	-		otm45471
orthoMCL	1	0.900	-	-		OOG6_100992
Panther	1	1.100	-	-	O	PTHR11141
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X910
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	14	13.810