DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sec23 and sec-23

DIOPT Version :10

Sequence 1:NP_001246932.1 Gene:Sec23 / 40694 FlyBaseID:FBgn0262125 Length:781 Species:Drosophila melanogaster
Sequence 2:NP_507877.1 Gene:sec-23 / 180317 WormBaseID:WBGene00004754 Length:821 Species:Caenorhabditis elegans


Alignment Length:835 Identity:486/835 - (58%)
Similarity:611/835 - (73%) Gaps:68/835 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTTYEEFIQQNEDRDGVRLTWNVWPSSRIEASRLVVPLACLYQPLKERPDL----PPIQYEPVLC 61
            |.|:||::...:..|||:.|||:||.||:::.:|||||.|.:.||||||..    ||::|:||||
 Worm     1 MATWEEYLGAQQANDGVQFTWNMWPHSRVDSQKLVVPLTCFFTPLKERPSTEVAQPPLEYDPVLC 65

  Fly    62 TRSNCRAILNPLCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYTITRAPT 126
            .:::|:|||||||.||||||:|:|.||..|||||..||||:|.::|.||.|.|:|||||:.:|.|
 Worm    66 QKASCKAILNPLCAVDYRAKIWMCPFCNNRNPFPAHYAAIAEDNRPPELYPQFTTIEYTLRKATT 130

  Fly   127 MPPVFIFLVDTCMDEEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGAEGCSKSYVFRG 191
            |||:|:|:|||||..|||.:||:.||.:|||||.:|||||||:|:|:|:|||..:|.|:||||:|
 Worm   131 MPPIFVFVVDTCMTAEELKSLKECLQTALSLLPADALVGLITYGRMVQLHELNTQGISRSYVFKG 195

  Fly   192 TKDLTAKQVQDM-------------------------LGIGRGAAP-----------------GP 214
            ||::||||::|:                         :.:|.||||                 ||
 Worm   196 TKEVTAKQIKDVMAGGGLSQRPAAGAPGAPAGAPGAPMAMGSGAAPLGQLPGSGLPGGLPRGGGP 260

  Fly   215 QQQQHLPGQ-----PAGAAAPVP--PAHRFLQPIGQCDAALGDLLSELQRDPWPVPQGKRYLRST 272
            .    |||.     ..|..||||  ||::|||||.:||.::.||:.::..|.||||||.|.||:|
 Worm   261 P----LPGAAQGIVAPGGGAPVPHAPANKFLQPISECDESINDLIDQISIDRWPVPQGHRPLRAT 321

  Fly   273 GAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDIHKDNVRFMKKAIK 337
            ||||::||.|||..:|:||.|||:|:||.|:.|||.||.:|||:||||.:.|.:|...:||||||
 Worm   322 GAALAVAVTLLESCFPSTGARIMSFIGGACTHGPGAVVGEELKNPIRSWNSIKEDAAPYMKKAIK 386

  Fly   338 HYDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNSTGGHMVMGDSFNSSLFKQTFQRVFARDG 402
            .||.||.|...|||:||:||||||||||||||.:.||:|||:||||||||||||||:||.|.:|.
 Worm   387 FYDGLAARIVKNGHAVDVYSCALDQTGLLEMKNMFNSSGGHVVMGDSFNSSLFKQTYQRSFDKDS 451

  Fly   403 RNDLKMAFNATLEVKCSRELKISGGIGSCVSLNVKSPSVSDVEIGMGNTVQWKLCTLNPSSTVAY 467
            ..:|||.||||:|||....|||.|.:|.|.|.||::.:|||.|:|:|.|.|||...::|.:|:..
 Worm   452 AGNLKMGFNATMEVKVGAGLKIEGVLGCCASGNVRNANVSDQEMGIGGTCQWKFGAISPRTTIGV 516

  Fly   468 FFEVVNQHAAPIPQGGRGCIQFITQYQHPSGQRRIRVTTLARNWADATSNVHHISAGFDQEAAAV 532
            .||:..||.:.|||||||.:||:|||||..|::||||||..|.|||..:...:|:.|||||||||
 Worm   517 VFEIAAQHGSAIPQGGRGMVQFVTQYQHADGRKRIRVTTTCRTWADMATQQPNIAYGFDQEAAAV 581

  Fly   533 LMARMVVYRAETD-EGPDILRWVDRQLIRLCQKFGEYSKDDPNSFRLSQNFSLFPQFMYHLRRSQ 596
            .:||:..:||..: :.|:.|||:||.||||||||||||||||||||||..||||||||:||||||
 Worm   582 AIARLASFRASNENDTPEALRWLDRSLIRLCQKFGEYSKDDPNSFRLSDKFSLFPQFMFHLRRSQ 646

  Fly   597 FLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTASIQADRILLMDTF 661
            ||||||||||||.:|||:|..|::.:|..||||:|:|||||||||||||||:||.||||||||.:
 Worm   647 FLQVFNNSPDETAYYRHILFSENVLESTTMIQPVLFSYSFNGPPEPVLLDTSSILADRILLMDDY 711

  Fly   662 FQILIYHGETIAQWRALKYQDMPEYENFKQLLQAPVDDAQEILQTRFPMPRYIDTEHGGSQARFL 726
            |.:|||||:||||||...:.:.|:|..|||||:|||.||..|||.||||||||.|||.|||||||
 Worm   712 FHVLIYHGQTIAQWRKQNFHENPQYATFKQLLEAPVADATSILQERFPMPRYIVTEHEGSQARFL 776

  Fly   727 LSKVNPSQTHNNMYAYGQAPIGQVTVDGGAPVLTDDVSLQLFMEHLKKLAVSTTT 781
            |||||||.||||.||.          :.|:.|.|||||||:||||||||:.|::|
 Worm   777 LSKVNPSLTHNNPYAN----------EAGSAVFTDDVSLQVFMEHLKKLSSSSST 821

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sec23NP_001246932.1 PLN00162 12..779 CDD:215083 480/820 (59%)
sec-23NP_507877.1 PLN00162 12..811 CDD:215083 474/812 (58%)

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