DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment MTA1-like and lin-40

DIOPT Version :9

Sequence 1:NP_001262293.1 Gene:MTA1-like / 40693 FlyBaseID:FBgn0027951 Length:922 Species:Drosophila melanogaster
Sequence 2:NP_504031.1 Gene:lin-40 / 178788 WormBaseID:WBGene00003025 Length:1022 Species:Caenorhabditis elegans


Alignment Length:1088 Identity:294/1088 - (27%)
Similarity:440/1088 - (40%) Gaps:349/1088 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 YRVGDYVYVETT--PNSPYLIRRIEELNKNQTGNVEAKVMCFYRRRDLPNPLVQLADKHQL---- 64
            |.|||:||.:.|  .::||.||:||||.|.:.|.|:|:.:.:.||||:|..|:::||:.|.    
 Worm    15 YAVGDFVYFDDTSATDAPYQIRKIEELVKTEKGGVDARCVVYLRRRDIPQHLLKIADQAQRRFDN 79

  Fly    65 -------------------------ATAEDSPLATKLKKTWLRTPVSE--EQAAQAVLDPSIAAL 102
                                     |..|.:|.||:.......|.|.|  :..|:.:.:      
 Worm    80 YYEVDKKKPENFTTKGFIVVNGASEAAPEAAPEATEASAETSETKVKEDTDDVAEKMEE------ 138

  Fly   103 DEE--------RTSPTQ--TSGGGGSATGNSGSNSSGTSNN--NSSSTAIGGGA----GGSGGAG 151
            |||        |||.|:  ::....:||............|  |...||.....    .|.||..
 Worm   139 DEECPAPVGQGRTSSTEEPSASDAPAATAKDKKEEKEAKENAKNLKETAEAEATKLIDWGDGGLP 203

  Fly   152 GDAEKGEALTSKQRYQIKHRELFLSRQVESIPATQIRGKCSVTLLNETESLQSYLNKDDTFFYCL 216
            ...:|   ||..||.:::..|:|::||.|.:||..|||||.|.||.:.|..|:||..||||::.|
 Worm   204 LGVDK---LTPDQRLKLRQHEIFMTRQSEILPAAAIRGKCRVVLLGDGEEAQNYLPLDDTFYHSL 265

  Fly   217 VFDPNQKTLLADKGEIRVGSRYQCDI--------------------------PAKLK-----DTA 250
            |:|||.:|||||||.||||.:||..:                          .||||     ||.
 Worm   266 VYDPNAQTLLADKGAIRVGEKYQAVVDEWMEPADREAKEAKVLAEKVKKEEEEAKLKAEAEEDTE 330

  Fly   251 TD------DRKLEEL------------------------ESLVWTPEHSLTDRKIDQFLVVSRSI 285
            .|      |.::.||                        |.|||.|.|:||||.|||:::|:||:
 Worm   331 NDGLTIAEDEEMPELKNEEKEETKVEEEATTTDSEGEVGEVLVWHPHHALTDRDIDQYMIVARSV 395

  Fly   286 GTFARALDCSSSVKQPSLHMSAAAASRDITLFHAMNILHKHEYSIEESMSSLVPST--------- 341
            |.||||:|.:|:.|.|:|.::||.||||:|:|||..|||:..|.:.:::..|||..         
 Worm   396 GLFARAIDGASAPKLPTLQLAAAFASRDVTIFHAHAILHQANYDVGQAVKYLVPVASRDTYPCQV 460

  Fly   342 ------------GPVLCRDEIEDWSASEANLFEEALEKYGKDFNDIRQDFLPWKTLKQIIEYYYM 394
                        ||:||||::|:||..|.||||:||:|.|||||:||.::||||:::.|:||||:
 Worm   461 DDSSGLQTKTLGGPILCRDQLEEWSTPEMNLFEDALDKVGKDFNEIRAEYLPWKSIRDIVEYYYL 525

  Fly   395 WKTTDRYVQQKRVK-------AVEAELKLKQVYIPQYNNNGKGNGTSTKAGGGI--YNGTTNGST 450
            .|.::||..:|:.|       :...:.|...:|||.:|.         .....|  ||   ...|
 Worm   526 MKASNRYTDRKKNKPSAGGGSSTTTDEKFTNIYIPPFNK---------PIAASILPYN---TSQT 578

  Fly   451 DLSSNGKPCESCGTTKSSQWNSVSSGHSTSRLCLSCWEYWRRYGSMK------------------ 497
            .|.:|..|||:|||..:..|...........||.:||..|:::..:.                  
 Worm   579 TLMNNDNPCENCGTLDALNWYQWGGVGDKKVLCSTCWIQWKKFAGLNQKHELERFDKTRPPPVEP 643

  Fly   498 -SATKGDAGEGDAKKKSSSAAS----TPTATLAGLATTPTAVVDLN--DDEKISDLTNRQLHRCS 555
             :.|...:....|.:|:::.|:    ||.......|.....::.||  |.:.:.::....|.|..
 Worm   644 VAPTPAASNGTPASQKAAATAAVNTLTPQQQQQQRAAAANMLMTLNSGDKQNLLNVAKEALARGQ 708

  Fly   556 IVNCGKEFKLKTHLARHYAQAHGIAI-----------SSGSPRPIMKTRTAFYLHTNPMTRVA-- 607
            |..  ::|   ..|.:::||.....|           :..:|:.:...|.    .|.|.|:.|  
 Worm   709 ITQ--EQF---LQLQKNFAQKIQAQIQQQIQQQQQRQAQTTPQVVATPRK----KTTPATKPAIV 764

  Fly   608 --RAICRSIVK---PK------KAARQSAYAIN--------AMLVKQEFTNRISGKSQAEIKKLL 653
              ..|||..|:   ||      |.:|:...||:        .||.|:....  |.::.|..|:.|
 Worm   765 FYTTICRRAVRRILPKSAFNLRKLSRRPNLAIDDEKILRAMIMLDKKHLLQ--SAQAAAGDKRSL 827

  Fly   654 LLKPKDRGSVTKIANRLGAPGSGPHEWLVLTPKDKMPLPAVVSFPKPPKAPDGSLVYDRVPNKSP 718
            :::.:....:|.:.:.|....:|           |...|..|:..:|                  
 Worm   828 IVESEFHKGITHLQHALTQAATG-----------KRSAPQAVASGEP------------------ 863

  Fly   719 DVVAVPADKELTIIPTQATSTIRKRAHEDQQLNGTEVTIVPSGPPAKRPNKDPMPSHCPSPEQFA 783
                                :.:....:.|||                            |..||
 Worm   864 --------------------SAKMAKQQQQQL----------------------------PTAFA 880

  Fly   784 AMMAASGQPLSRHHLN--GKQKIA---QMARGGNGRKQVISWMDAP------------------- 824
            |..::|..|:....|.  |...:|   .|..||:| ...:|..|||                   
 Worm   881 ASGSSSWTPIVAPSLEDVGNSLLAVNHAMKCGGDG-GGCVSNNDAPILRQYLTNHQGPATRIDSV 944

  Fly   825 -----------------DDVYFRANDTHK-KTRKILSAVDLRRAARKP 854
                             :||..||....| |.|.:|:..:.||.||.|
 Worm   945 RELMRTRTDSRWFVVKDEDVKMRAGPRMKTKRRNLLTRHESRRIARHP 992

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MTA1-likeNP_001262293.1 BAH_MTA 3..253 CDD:240060 106/332 (32%)
ELM2 232..284 CDD:279754 30/112 (27%)
SANT_MTA3_like 352..397 CDD:212559 26/44 (59%)
SANT 353..398 CDD:197842 27/44 (61%)
ZnF_GATA 458..508 CDD:238123 13/68 (19%)
lin-40NP_504031.1 BAH_MTA 12..302 CDD:240060 99/295 (34%)
ELM2 281..394 CDD:279754 30/112 (27%)
SANT 482..527 CDD:197842 27/44 (61%)
SANT 483..527 CDD:304392 26/43 (60%)
ZnF_GATA 582..635 CDD:214648 13/52 (25%)
ZnF_GATA 587..620 CDD:294105 11/32 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159927
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 322 1.000 Inparanoid score I1487
Isobase 1 0.950 - 0 Normalized mean entropy S4979
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002092
OrthoInspector 1 1.000 - - oto17831
orthoMCL 1 0.900 - - OOG6_103523
Panther 1 1.100 - - LDO PTHR10865
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3578
SonicParanoid 1 1.000 - - X1382
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.870

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