DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12170 and Oxsm

DIOPT Version :9

Sequence 1:NP_649565.1 Gene:CG12170 / 40692 FlyBaseID:FBgn0037356 Length:438 Species:Drosophila melanogaster
Sequence 2:NP_001346811.1 Gene:Oxsm / 71147 MGIID:1918397 Length:459 Species:Mus musculus


Alignment Length:428 Identity:233/428 - (54%)
Similarity:294/428 - (68%) Gaps:26/428 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 RRRVVVTGSGAVTPLGNNGPDSWRRILAGESAI-SRLSAEFKGLPCQVAAQIPR---------EN 77
            |||||:||.|.|||||......|.|:|.|||.| |.:..|:|.:||.|||.:||         ||
Mouse    41 RRRVVITGIGLVTPLGVGTQLVWDRLLRGESGIVSVVGDEYKNIPCSVAAYVPRGPHEGQFNEEN 105

  Fly    78 LQLDQHLTKSDIKLMSPATQLAVLAAEEALSTGKLCPKQLSEEELERFGVCVGMGMFDLAEVYGA 142
            .     ::|||.|.||.:|.:||.|||.||......||:  |.:....||.:||||..| ||...
Mouse   106 F-----VSKSDAKSMSSSTIMAVGAAELALKDSGWHPKR--EADQVATGVAIGMGMVPL-EVISE 162

  Fly   143 WNQL--QRGYNRVSPFFVPRLLPSMACGHISMRHGLRGPNHSVSTACATGAHALGDAMRFIRSGD 205
            ...|  .:|||:|||||||::|.:||.|.:|:|:.|:||||||||||.|||||:||:.|||..||
Mouse   163 TALLFQTKGYNKVSPFFVPKILINMAAGQVSIRYKLKGPNHSVSTACTTGAHAVGDSFRFIAHGD 227

  Fly   206 ADLMLAGSGEACIDPLSIAGFCRLRALSTAFNDNPAVASRPFDKSRDGFVMGEGAAVLLLEELEH 270
            ||:|:||..::||.|||:|||.|.||||:  |.:|.:|.|||...|||||||||||||:|||.||
Mouse   228 ADVMVAGGTDSCISPLSLAGFSRARALSS--NPDPKLACRPFHPERDGFVMGEGAAVLVLEEHEH 290

  Fly   271 ARARGAPILAEILGYGLSGDAYHITSPSDDGAGATLAMKRAIQDAGIAPEDVTYVNAHATSTPTG 335
            |..|||.|.||||||||||||.|||:|..:|.||...|..|::|||::||.::||||||||||.|
Mouse   291 AVQRGARIYAEILGYGLSGDAGHITAPDPEGEGALRCMAAAVKDAGVSPEQISYVNAHATSTPLG 355

  Fly   336 DRIESHAIGRVFGAHTPQVRVSSTKGAHGHLLGSSGNLEALFVVLACANNKLPPSINIE--HLDV 398
            |..|:.||.|:|..|...:.:||||||.|||||::|.:||.|..|||.:.||||::|::  ..:.
Mouse   356 DAAENRAIKRLFRDHACALAISSTKGATGHLLGAAGAVEATFTALACYHQKLPPTLNLDCTEPEF 420

  Fly   399 DVNVV-TKATDWSADQKRRVALKNSFGFGGTNASLCIA 435
            |:|.| .::.:|.| :.|.:.|.||||||||||:||||
Mouse   421 DLNYVPLESQEWKA-EGRCIGLTNSFGFGGTNATLCIA 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12170NP_649565.1 PRK07314 23..437 CDD:235987 233/428 (54%)
KAS_I_II 24..434 CDD:238430 229/424 (54%)
OxsmNP_001346811.1 KAS_I_II 42..456 CDD:238430 229/424 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839717
Domainoid 1 1.000 238 1.000 Domainoid score I2288
eggNOG 1 0.900 - - E1_COG0304
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5820
Inparanoid 1 1.050 413 1.000 Inparanoid score I1825
Isobase 1 0.950 - 0 Normalized mean entropy S1147
OMA 1 1.010 - - QHG53767
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002908
OrthoInspector 1 1.000 - - oto92750
orthoMCL 1 0.900 - - OOG6_100752
Panther 1 1.100 - - LDO PTHR11712
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R883
SonicParanoid 1 1.000 - - X2728
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.780

Return to query results.
Submit another query.