DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12171 and Rdh8

DIOPT Version :10

Sequence 1:NP_649563.1 Gene:CG12171 / 40690 FlyBaseID:FBgn0037354 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_001162065.1 Gene:Rdh8 / 690953 RGDID:1589829 Length:312 Species:Rattus norvegicus


Alignment Length:198 Identity:65/198 - (32%)
Similarity:105/198 - (53%) Gaps:24/198 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IIVTGASSGIGAGTSVLLA-----KLGGLLTIVGRNLDKLNETAEQIVAAGG---APALQVA-AD 64
            ::::|.|||||...:|.||     :...:.|:  |:|.|    .|.:.||.|   ...|.|| .|
  Rat     8 VLISGCSSGIGLELAVQLAHDPRQRYQVVATM--RDLGK----KEPLEAAAGEALGKTLSVAQLD 66

  Fly    65 INSESDVQGIVSATLAKHGRIDVLVNNAGILELGSIENTSLEQFDRVMNTNVRSLYQLTHLVTPE 129
            :.|:..|...:|.  .:.|::|:||||||:..:|.:|:.||.....|.|||.....:|...|.|.
  Rat    67 VCSDESVTNCLSH--IEGGQVDILVNNAGVGLVGPLEDLSLATMQNVFNTNFFGAVRLVKAVLPG 129

  Fly   130 LIKTK-GNIVNVSSVNGIRSFPGVL---AYNVSKAAVDQFTRCVALELAPKGVRVNSVNPGVIIT 190
            :.:.: |:||.||||.|::   ||:   .|..||.|::.|...:|::|....:.::.|.||.:||
  Rat   130 MKRRRQGHIVVVSSVMGLQ---GVMFNDVYAASKFALEGFFESLAIQLRQFNIFISMVEPGPVIT 191

  Fly   191 ELQ 193
            :.:
  Rat   192 DFE 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12171NP_649563.1 Rossmann-fold NAD(P)(+)-binding proteins 4..254 CDD:473865 65/198 (33%)
Rdh8NP_001162065.1 Rossmann-fold NAD(P)(+)-binding proteins 8..262 CDD:473865 65/198 (33%)

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