DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12171 and rdh8b

DIOPT Version :10

Sequence 1:NP_649563.1 Gene:CG12171 / 40690 FlyBaseID:FBgn0037354 Length:257 Species:Drosophila melanogaster
Sequence 2:NP_957082.2 Gene:rdh8b / 393761 ZFINID:ZDB-GENE-040426-1759 Length:317 Species:Danio rerio


Alignment Length:199 Identity:61/199 - (30%)
Similarity:102/199 - (51%) Gaps:6/199 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPSFKDKVIIVTGASSGIGAGTSVLLAKLGGLLTIVGRNLDKLNETAEQIVAAG---GAPALQVA 62
            |.|...||:::||.|||||.|.:|:||:.......|...:..|....:.:.|||   |.......
Zfish     1 MASAGQKVVLITGCSSGIGLGIAVMLARDKQQRYYVIATMRDLKRQDKLVCAAGDTYGKTLTVCT 65

  Fly    63 ADINSESDVQGIVSATLAKHGRIDVLVNNAGILELGSIENTSLEQFDRVMNTNVRSLYQLTHLVT 127
            .|:.|...|:..|.:...:|  ||:|:||||:..:|.:|..||:...:|..||.....::...|.
Zfish    66 LDVCSNESVRQCVDSVKDRH--IDILINNAGVGLVGPVEGLSLDDMMKVFETNFFGAVRMIKEVM 128

  Fly   128 PELIKTK-GNIVNVSSVNGIRSFPGVLAYNVSKAAVDQFTRCVALELAPKGVRVNSVNPGVIITE 191
            |::.|.: |:|:.:|||.|::.......|..||.|::.|...:|::|....|.::.:.||.:.||
Zfish   129 PDMKKRRSGHIIVISSVMGLQGVAFNDVYAASKFAIEGFCESLAVQLLKFNVTMSMIEPGPVHTE 193

  Fly   192 LQRR 195
            .:.:
Zfish   194 FEMK 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12171NP_649563.1 Rossmann-fold NAD(P)(+)-binding proteins 4..254 CDD:473865 59/196 (30%)
rdh8bNP_957082.2 type1_17beta-HSD-like_SDR_c 7..264 CDD:187666 59/193 (31%)

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