DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12171 and rbmx

DIOPT Version :10

Sequence 1:NP_649563.1 Gene:CG12171 / 40690 FlyBaseID:FBgn0037354 Length:257 Species:Drosophila melanogaster
Sequence 2:XP_004917002.1 Gene:rbmx / 100135403 XenbaseID:XB-GENE-5733378 Length:370 Species:Xenopus tropicalis


Alignment Length:82 Identity:21/82 - (25%)
Similarity:29/82 - (35%) Gaps:19/82 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 VNSVNPGVIITELQRRGGLDQEAYVKFLE-----HAKVTHALGRPGEVKEVAAAIAFL------- 232
            |.:..||.:..     |||:.|...|.||     :.:|...|.........:...||:       
 Frog     2 VEADRPGKLFI-----GGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPAD 61

  Fly   233 ASDEASFSTGISLPVDG 249
            |.|.|....|.:|  ||
 Frog    62 AKDAARELNGKAL--DG 76

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12171NP_649563.1 Rossmann-fold NAD(P)(+)-binding proteins 4..254 CDD:473865 21/82 (26%)
rbmxXP_004917002.1 RRM_RBMX_like 7..86 CDD:409816 20/77 (26%)
RBM1CTR 148..192 CDD:400429
Blue background indicates that the domain is not in the aligned region.

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