DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL13A and RPL16B

DIOPT Version :9

Sequence 1:NP_649560.1 Gene:RpL13A / 40687 FlyBaseID:FBgn0037351 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_014330.1 Gene:RPL16B / 855655 SGDID:S000005013 Length:198 Species:Saccharomyces cerevisiae


Alignment Length:201 Identity:106/201 - (52%)
Similarity:140/201 - (69%) Gaps:4/201 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNP 68
            ::...||||.:.||||||||.:||.:|.|.|:.|||.|.||:||.|:|||:|:..:|||....|.
Yeast     1 MSQPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNK 65

  Fly    69 ARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRS 133
            .||||||||||||.|||:|||:.|||.||:|||.||::|:|||.||||::|||||.|:|||.|:.
Yeast    66 TRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRVLRLKP 130

  Fly   134 DRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAE-PFNKI 197
            .|||..:|:||..|||.|:||:..||.|||.:   :.::..:.:..|.|.....|.|:| ...|.
Yeast   131 GRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVR---SAEYYAKKRAFTKKVSSASAAASESDVAKQ 192

  Fly   198 IKSYGY 203
            :.|:||
Yeast   193 LASFGY 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL13ANP_649560.1 Ribosomal_L13 6..203 CDD:412316 104/197 (53%)
RPL16BNP_014330.1 PTZ00068 1..198 CDD:240253 104/199 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342004
Domainoid 1 1.000 160 1.000 Domainoid score I859
eggNOG 1 0.900 - - E1_COG0102
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 218 1.000 Inparanoid score I779
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53755
OrthoFinder 1 1.000 - - FOG0001720
OrthoInspector 1 1.000 - - otm46602
orthoMCL 1 0.900 - - OOG6_100793
Panther 1 1.100 - - O PTHR11545
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1111
SonicParanoid 1 1.000 - - X1276
TreeFam 1 0.960 - -
1413.790

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