DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpL13A and rpl1602

DIOPT Version :9

Sequence 1:NP_649560.1 Gene:RpL13A / 40687 FlyBaseID:FBgn0037351 Length:205 Species:Drosophila melanogaster
Sequence 2:NP_594441.1 Gene:rpl1602 / 2542006 PomBaseID:SPAC23A1.11 Length:197 Species:Schizosaccharomyces pombe


Alignment Length:197 Identity:121/197 - (61%)
Similarity:144/197 - (73%) Gaps:5/197 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARG 71
            :.||||.:|||||||||||||.||.|.||.||||||||:||||:|||:|:||||||.|..||:||
pombe     6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRG 70

  Fly    72 PFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRK 136
            .||||||||||.||||||:||||.||||||..|:..:|||.|:||::|||||.|:|||.|:..||
pombe    71 AFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRK 135

  Fly   137 YCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSY 201
            ||.|||||.||||.|.|::..||.:||.|.....:     .||..:.:...||||...|..:..:
pombe   136 YCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQ-----AKLAKQKKIASAKAASSVNGKLAEF 195

  Fly   202 GY 203
            ||
pombe   196 GY 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpL13ANP_649560.1 Ribosomal_L13 6..203 CDD:412316 119/195 (61%)
rpl1602NP_594441.1 PTZ00068 4..197 CDD:240253 119/195 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 173 1.000 Domainoid score I869
eggNOG 1 0.900 - - E1_COG0102
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H111053
Inparanoid 1 1.050 244 1.000 Inparanoid score I806
OMA 1 1.010 - - QHG53755
OrthoFinder 1 1.000 - - FOG0001720
OrthoInspector 1 1.000 - - otm47072
orthoMCL 1 0.900 - - OOG6_100793
Panther 1 1.100 - - LDO PTHR11545
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1111
SonicParanoid 1 1.000 - - X1276
TreeFam 1 0.960 - -
1413.860

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