Protein Alignment Rga and VIP2

DIOPT Version :10

• Sequence 1: NP_730966.1
• Gene: Rga / 40683
• FlyBaseID: FBgn0017550
• Length: 585
• Species: Drosophila melanogaster
• Sequence 2: NP_568912.2
• Gene: VIP2 / 836092
• AraportID: AT5G59710
• Length: 614
• Species: Arabidopsis thaliana
• Alignment Length: 623
• Identity: 167/623 - (26%)
• Similarity: 252/623 - (40%)
• Gaps: 179/623 - (28%)

  Fly     4 LNFQQPPRSIANAALAGRTTGGFGGSSLAGHVTPTSGMFQTDFANSYPG------TANYGQAPQQ 62
            ||....|...:||       .|.|| |:.|.::.::|:..   .||.||      ..|.|
plant   118 LNVVGNPGFSSNA-------NGVGG-SIPGILSTSAGLSN---RNSVPGMGISQLLGNSG----- 166

  Fly    63 QQQQQQQPQLS---------PNRNAQLSVGG---PAISS-----GNRNANLFGQRQFVERRAMQG 110
                   |:::         .|....:|.||   |.:||     .|..:.|..|.|   .|.|.|
plant   167 -------PRITNSMGNMVGGGNLGRNISSGGLSIPGLSSRLNLAANSGSGLNVQGQ---NRMMGG 221

  Fly   111 L---GSGPMSNMGNFMQTGRGGYGTGGGGGGPLNNFHVFGGGGGSDTSTP---ALLD-PTEFPSL 168
            :   ||..||.:||...|          |||||:..||........:..|   :|.| ..:||.|
plant   222 VLPQGSQVMSMLGNSYHT----------GGGPLSQNHVQSVNNMMLSDHPNDSSLFDINNDFPQL 276

  Fly   169 TNARGQNDQTLPQSNPLQPPGSKPYGNFFTSFGMVKQPTSEQS-EFTMSNEDFPALPGTQNSDGT 232
            |:..|....|......|:..|          .|:   |..:|: ||::.|||||||||.:
plant   277 TSRPGSAGGTQGHLGSLRKQG----------LGV---PLVQQNQEFSIQNEDFPALPGYK----- 323

  Fly   233 TNAVGSVAGTGGSGGASTENHLDGTEKPM---NSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIG 294
                          |.::|..:|..:|..   |::.:..|.:.|.|.:    ||..|||..|
plant   324 --------------GGNSEYPMDLHQKEQLHDNAMSMMHSQNFSMGRS----GGFNLGATYS--- 367

  Fly   295 GLAVGGGGGAGSSGGGGVGGNAASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGVGGGLGSGSG 359
                                 :........|....|...|: |:..:.:.||:..:|
plant   368 ---------------------SHRPQQQPQHTSSTGGLQGL-GLRPLSSPNAVSSIG-------- 402

  Fly   360 SSGSGAGGEHLNDNSSNDKLVKSGVQTS-----PDGKVTNI----PATMVNNQ-----FGMVGLL 410
                            .|:|::...|..     |..::::|    .:.|.:.|     |.::|||
plant   403 ----------------YDQLIQQYQQHQNQSQFPVQQMSSINQFRDSEMKSTQSEADPFCLLGLL 451

  Fly   411 TFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAGPFVAQPCRAQDVEFNVPPEYLINFA 475
            ..:.  .::|.|.:|:||.|||.|||:|||..:|:.|||.|:..:|.:: :|||.||..|   :|
plant   452 DVLN--RSNPELTSLALGIDLTTLGLDLNSTGNLYKTFASPWTNEPAKS-EVEFTVPNCY---YA 510

  Fly   476 IR-DKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEK 539
            .. ..||....|:...:|||:.||:...|..||.||.||:.|.|.||.|.::|..|:.  :...:
plant   511 TEPPPLTRASFKRFSYELLFYTFYSMPKDEAQLYAADELYERGWFYHKELRVWFFRVG--EPLVR 573

  Fly   540 NGTKERGTFYYFDAQSWKRLSKV-FQIDPEKLDKCPNI 576
            ..|.||||:.|.|..|:|.:.|. |.|..|.::|.|::
plant   574 AATYERGTYEYLDPNSFKTVRKEHFVIKYELMEKRPSL 611

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rga	NP_730966.1	NOT2_3_5	445..568	CDD:461199	46/124 (37%)
VIP2	NP_568912.2	NOT2_3_5	484..603	CDD:461199	46/124 (37%)