DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rga and CG6576

DIOPT Version :10

Sequence 1:NP_730966.1 Gene:Rga / 40683 FlyBaseID:FBgn0017550 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_648253.1 Gene:CG6576 / 39003 FlyBaseID:FBgn0035924 Length:267 Species:Drosophila melanogaster


Alignment Length:110 Identity:43/110 - (39%)
Similarity:63/110 - (57%) Gaps:14/110 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   374 SSNDKLVKSGVQTSPDGKVTNIPATMVNNQFGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNL 438
            ||:.....:|::::.|||.|||||||:::|||::|||..:|..:|||....|..|.|||..||:|
  Fly   102 SSSTNTNAAGIRSTDDGKFTNIPATMLSDQFGIIGLLAAMRTTQTDPGATQLVFGEDLTTYGLDL 166

  Fly   439 NSQESLHTTFAGPFVAQP-------C------RA-QDVEFNVPPE 469
            .:|..::..|.||...:|       |      || :|...|.||:
  Fly   167 AAQGDIYVHFNGPLTREPPDRNSMDCALEMGMRAMRDSIINEPPK 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RgaNP_730966.1 NOT2_3_5 445..568 CDD:461199 11/39 (28%)
CG6576NP_648253.1 None

Return to query results.
Submit another query.