DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rga and cnot2

DIOPT Version :9

Sequence 1:NP_730966.1 Gene:Rga / 40683 FlyBaseID:FBgn0017550 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001106600.1 Gene:cnot2 / 100127821 XenbaseID:XB-GENE-991720 Length:522 Species:Xenopus tropicalis


Alignment Length:596 Identity:200/596 - (33%)
Similarity:278/596 - (46%) Gaps:167/596 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MANLNFQQPPRSIANAALAGRTTGGFGGSSLAGHVTPTSGMFQTDFANSYPGTANYGQAPQQQQQ 65
            |:| |..|..||::.            |:.|..|||||:|:  ...:...|.:.|.|..|...:.
 Frog    71 MSN-NTPQLNRSLSQ------------GTQLQNHVTPTTGV--PTMSLHTPPSPNRGILPMNPRN 120

  Fly    66 QQQQPQLS-----PNRNAQLSVGGPAISSGNRNANLF-------GQRQFVERRAMQGLGSGPMSN 118
            .....|:.     |:|:..:|..|  :.|.||::...       ..||.....:|.|.|   ||.
 Frog   121 MMNHSQVGQGIGIPSRSNNMSSSG--LGSPNRSSPSIICMPKQPPSRQPFTVNSMSGFG---MSR 180

  Fly   119 MGNFMQTGRGGYGTGGGGGGPLNNFHVFGGGGGSDTSTPALLDPTEFPSLT--NARGQNDQTLPQ 181
            ...|            |....|:| ::|.|..||:..|.  ||.::||:|.  |.|..:....|.
 Frog   181 NQAF------------GLNNSLSN-NIFNGTDGSENVTG--LDLSDFPALADRNRREGSGNPTPL 230

  Fly   182 SNPLQPPGSKPYGNFFTSFGMVKQPTSEQS-EFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGS 245
            .|||  .|..||      .|||.:|.|||| :|::.|||||||||:...|.|             
 Frog   231 INPL--AGRAPY------VGMVTKPASEQSQDFSIHNEDFPALPGSSYKDPT------------- 274

  Fly   246 GGASTENHLDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVGGGGGAGSSGGG 310
                                   |::..|.||:...|.:                   |.|:.|.
 Frog   275 -----------------------SSNDDSKSNLNTPGKS-------------------ASSTDGP 297

  Fly   311 GVGGNAASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGVGGGLGSGSGSSGSGAGGEHLNDNSS 375
            ...|:.:|                                                      .:.
 Frog   298 KFPGDKSS------------------------------------------------------TTQ 308

  Fly   376 NDKLVKSGVQTSPDGKVTNIPATMVNNQFGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNS 440
            |:...|.|:|..|||:|||||..||.:||||:|||||||||||||.:|.|:||.|||.|||||||
 Frog   309 NNNQQKKGIQVLPDGRVTNIPQGMVTDQFGMIGLLTFIRAAETDPGMVHLALGNDLTTLGLNLNS 373

  Fly   441 QESLHTTFAGPFVAQPCRAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMM 505
            .|:|:..||.|:.:.|||.||::|:||.|||.|..|||||.|..|.:..|||||:|:|.|.||::
 Frog   374 PENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVL 438

  Fly   506 QLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYYFDAQSWKRLSKVFQIDPEKL 570
            ||:||.||.:|:||||.||::||||.||::...|..|.||||:|:||..:|::::|.|.::.:||
 Frog   439 QLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKL 503

  Fly   571 DKCPNISAFMN 581
            ::.|.:.:..|
 Frog   504 EERPQLPSTFN 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RgaNP_730966.1 NOT2_3_5 445..568 CDD:282064 63/122 (52%)
cnot2NP_001106600.1 NOT2_3_5 378..501 CDD:367845 63/122 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 150 1.000 Domainoid score I4372
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1273874at2759
OrthoFinder 1 1.000 - - FOG0003536
OrthoInspector 1 1.000 - - oto102415
Panther 1 1.100 - - LDO PTHR23326
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2412
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.020

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