DRSC/TRiP Functional Genomics Resources

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Protein Alignment SecS and hdc

DIOPT Version :9

Sequence 1:NP_649556.3 Gene:SecS / 40681 FlyBaseID:FBgn0037347 Length:478 Species:Drosophila melanogaster
Sequence 2:XP_005169965.1 Gene:hdc / 793609 ZFINID:ZDB-GENE-080102-5 Length:608 Species:Danio rerio


Alignment Length:314 Identity:62/314 - (19%)
Similarity:109/314 - (34%) Gaps:80/314 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 LQSLRKRR------PGARYVL-----------WSRIDQKSCFKAITATGLVPVVIPCLIKGES-- 197
            |..:|:||      ||....|           ||.|.|          .:..:::|.::..:|  
Zfish    21 LTGIRERRVVPDVQPGFMRPLLPSSAPYEPEDWSTIMQ----------DVENIIMPGVVHWQSPH 75

  Fly   198 -------LNTNVDLFREKIKSLGVDSILCLYTTTSCFAPRNSDDIAEVSKLSKQWQIP------H 249
                   ||:...|..:.:    .|:|.||..|.:........::..:..|.|...:|      |
Zfish    76 MHAYFPALNSWPSLLGDML----ADAINCLGFTWASSPACTELEMCVLDWLCKALGLPDHYLHHH 136

  Fly   250 LVNNAYGLQAKEIVNQLECANRVGRIDYFVQSSDKNLLVPVGSAIVASFNESVLHDVASTYAG-R 313
            ..:...|:....:......|....|.|..:|...:        |.....:||||:.....||. :
Zfish   137 PQSTGGGILQSTVSECTLVALLAARKDRILQMKSE--------ATHTDTDESVLNSRLVAYASDQ 193

  Fly   314 ASGSQSLDVLMTLLSLGRNGFRLLFDQRGENFNYLRENLRKFAEPRGEIVIDSRFNSISLAITLA 378
            |..|.....|::|:       ::.|.|....|:...|.|::..|       :.|.:.:...:..|
Zfish   194 AHSSVEKAGLISLV-------KIRFLQTDAVFSLRGETLQRAVE-------EDRRSGLIPVMVCA 244

  Fly   379 TLAGDQMKSITKL----------GSMLHM-RGVSGARVIVPGQNKTIDGHEFLD 421
            ||....:.|..:|          |..||: ...:|:.::.|.....:||.:|.|
Zfish   245 TLGSTGVCSFDRLDELGPVCVREGLWLHVDAAYAGSALLCPELRYFLDGIQFAD 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecSNP_649556.3 AAT_I 12..457 CDD:302748 62/314 (20%)
hdcXP_005169965.1 Pyridoxal_deC 35..414 CDD:278699 58/300 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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