DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecS and Hdc

DIOPT Version :9

Sequence 1:NP_649556.3 Gene:SecS / 40681 FlyBaseID:FBgn0037347 Length:478 Species:Drosophila melanogaster
Sequence 2:NP_001260855.1 Gene:Hdc / 36076 FlyBaseID:FBgn0005619 Length:847 Species:Drosophila melanogaster


Alignment Length:446 Identity:94/446 - (21%)
Similarity:155/446 - (34%) Gaps:101/446 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 LEAQPKAAGSTLLARLTNAL-----------ILDLI------RGIGLP---------SCAGCFLV 140
            |.:.|...|. :||...|.|           .|::|      :.||||         |..|..|.
  Fly    83 LNSMPSLLGD-MLADAINCLGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQGGGVLQ 146

  Fly   141 PMCTGMTL-------TLCLQSLRKRRPG-------ARYVLWSRIDQKSCFKAITATGLVPVVIPC 191
            ...:..||       |..:|...:|.||       ||.|.:......|..:.....|||.  :..
  Fly   147 TTASEATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAALIGLVR--MRY 209

  Fly   192 LIKGESLNTNVDLFREKIKSLGVDSI--------LC--LYTTTSCFAPRNSDDIAEVSKLSKQWQ 246
            :...:.|.....|.||.|:    |.|        :|  |.||.||    :.|::.|:..:..:..
  Fly   210 IEADDDLAMRGKLLREAIE----DDIKQGLVPFWVCATLGTTGSC----SFDNLEEIGIVCAEHH 266

  Fly   247 IPHLVNNAYGLQAKEIVNQLECANRVGRIDYFVQSSDKNLLVPVGSAIVASFNESVLH---DVAS 308
            :...|:.||...|............:.|.|....:..|.|:|...:..:...:.:.:|   :|..
  Fly   267 LWLHVDAAYAGSAFICPEFRTWLRGIERADSIAFNPSKWLMVHFDATALWVRDSTAVHRTFNVEP 331

  Fly   309 TYAGRASGSQSLDVLMTLLSLGRNGFRLL---FDQRGENF----NYLRENLRKFAEPRGEIVIDS 366
            .|....:...::|.:...:.|.|. ||.|   |..|....    .::||.:|...:....::.|.
  Fly   332 LYLQHENSGVAVDFMHWQIPLSRR-FRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALVLADH 395

  Fly   367 RFN---SISLAITLATLAGDQ------MKSITKLGSMLH-----MRGVSGARVIVPGQNKTIDGH 417
            ||.   ...|.:.:..:.||.      :|.:...|: ||     ::|....|..:...:.|:|  
  Fly   396 RFELPAKRHLGLVVFRIRGDNEITEKLLKRLNHRGN-LHCIPSSLKGQYVIRFTITSTHTTLD-- 457

  Fly   418 EFLDFGSHRSNLQVPYLTVAAGIGITREEIDKFFDIFNKCWNQIFQTKNEKIMSLL 473
               |.......::....||...:.||         |.|:.:.:..:.|||...|.|
  Fly   458 ---DIVKDWMEIRQVASTVLEEMNIT---------ISNRVYLKETKEKNEAFGSSL 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecSNP_649556.3 AAT_I 12..457 CDD:302748 89/428 (21%)
HdcNP_001260855.1 Pyridoxal_deC 35..413 CDD:278699 72/341 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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