DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SecS and Csad

DIOPT Version :9

Sequence 1:NP_649556.3 Gene:SecS / 40681 FlyBaseID:FBgn0037347 Length:478 Species:Drosophila melanogaster
Sequence 2:NP_001346055.1 Gene:Csad / 246277 MGIID:2180098 Length:493 Species:Mus musculus


Alignment Length:478 Identity:101/478 - (21%)
Similarity:163/478 - (34%) Gaps:133/478 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LVPDNYLQLGLAAQR-----SKQRSFKELLEKRKLPKNGWSDERIEELV---------------- 55
            :|.|..:..|.:|..     .:....|:||: .:|...|.|.|:|.|..                
Mouse    27 IVVDEAILKGTSASEKVCEWKEPEELKQLLD-LELQSQGESREQILERCRTVIHYSVKTGHPRFF 90

  Fly    56 ---------HMLA------SLDSNNYPHKVG----LGEREARIACKLVARRHYNFGHGIGRSGDL 101
                     |.||      ||:::.|.:::.    |.|.|  :..||.|...:|.|.|:...|  
Mouse    91 NQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEE--VLKKLRALVGWNSGDGVFCPG-- 151

  Fly   102 LEAQPKAAGSTLLARLTNALILDLIRGIGLPSC--AGCFLVPMCTGMTLTLCLQSLRKRRPGARY 164
                    ||     ::|...::|.|....|.|  .|...:|.....|...|..|:.|   ||.:
Mouse   152 --------GS-----ISNMYAMNLARFQRYPDCKQRGLRALPPLALFTSKECHYSITK---GAAF 200

  Fly   165 VLWSRIDQKSCFKAITATGLVPVVIPCLIKGESLNTNVDLFREKIKSLGVDSILCLYTTTS---- 225
             |....|.....||.....::|               .||.|:.|.:....|:..|.:.||    
Mouse   201 -LGLGTDSVRVVKADERGRMIP---------------EDLERQIILAEAEGSVPFLVSATSGTTV 249

  Fly   226 --CFAPRNSDDIAEVSKLSKQW---------------QIPHLVNNAYGLQA---------KEIVN 264
              .|.|  .|.||:|.:....|               ...||::   |:|.         |.:..
Mouse   250 LGAFDP--LDAIADVCQRHGLWFHVDAAWGGSVLLSRTHRHLLD---GIQRADSVAWNPHKLLAA 309

  Fly   265 QLECANRVGRIDYFVQSSDKNLLVPV-GSAIVASFNESVLHDVASTYAGR-ASGSQSLDVLMTLL 327
            .|:|:..:.|       ...|||... ||.....|.:...:|||.....: ....:.:|.|...|
Mouse   310 GLQCSALLLR-------DTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWL 367

  Fly   328 ---SLGRNGFRLLFDQRGENFNYLRENLRKFAEPRGEIVIDSRFNSISLAITLATLAG-----DQ 384
               :.|..|.....||......||.|.::|  ....|:|::..|.::.......:|.|     |.
Mouse   368 MWKAQGGQGLERRIDQAFALTRYLVEEIKK--REGFELVMEPEFVNVCFWFVPPSLRGKKESPDY 430

  Fly   385 MKSITKLGSMLHMRGVSGARVIV 407
            .:.::::..:|..|.|....:::
Mouse   431 SQRLSQVAPVLKERMVKKGTMMI 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SecSNP_649556.3 AAT_I 12..457 CDD:302748 101/478 (21%)
CsadNP_001346055.1 DOPA_deC_like 89..481 CDD:99743 88/415 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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