DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vha26 and VMA4

DIOPT Version :9

Sequence 1:NP_001287182.1 Gene:Vha26 / 40679 FlyBaseID:FBgn0283535 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_014977.3 Gene:VMA4 / 854509 SGDID:S000005859 Length:233 Species:Saccharomyces cerevisiae


Alignment Length:228 Identity:81/228 - (35%)
Similarity:136/228 - (59%) Gaps:4/228 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ALSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEKQVEL 66
            ||:...|..::..|.|||.:||.|||:||..||::|:.|||..:|:.:...|...::.|.|:..|
Yeast     7 ALTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAML 71

  Fly    67 QKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQGLFQIMEPK 131
            .::|..|.:.|:.|||||..||..:..:.::.:::|..:..|:.||:.:|..|||:.|.:::|||
Yeast    72 SQQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPK 136

  Fly   132 VILRCREVDVPLVRNVLPAAVEQY--KAQINQNVELFIDEKDFLSAD-TCGGVELLALNGRIKVP 193
            .|::..|.||.|:.::....:.:|  ||| ...:|..:...|:|:.| ..|||.:...:.:|::.
Yeast   137 AIVKALERDVDLIESMKDDIMREYGEKAQ-RAPLEEIVISNDYLNKDLVSGGVVVSNASDKIEIN 200

  Fly   194 NTLESRLDLISQQLVPEIRNALFGRNVNRKFTD 226
            ||||.||.|:|::.:|.||..|:|.:..|||.|
Yeast   201 NTLEERLKLLSEEALPAIRLELYGPSKTRKFFD 233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vha26NP_001287182.1 NtpE 9..217 CDD:224308 73/210 (35%)
vATP-synt_E 18..216 CDD:280215 70/200 (35%)
VMA4NP_014977.3 vATP-synt_E 23..223 CDD:396537 70/200 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344173
Domainoid 1 1.000 129 1.000 Domainoid score I1151
eggNOG 1 0.900 - - E1_COG1390
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1282
Inparanoid 1 1.050 146 1.000 Inparanoid score I1149
Isobase 1 0.950 - 0 Normalized mean entropy S881
OMA 1 1.010 - - QHG53684
OrthoFinder 1 1.000 - - FOG0002151
OrthoInspector 1 1.000 - - oto100128
orthoMCL 1 0.900 - - OOG6_101237
Panther 1 1.100 - - LDO PTHR45715
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1632
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.740

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