DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CRMP and crmp1

DIOPT Version :9

Sequence 1:NP_730954.2 Gene:CRMP / 40675 FlyBaseID:FBgn0023023 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_001072314.1 Gene:crmp1 / 779767 XenbaseID:XB-GENE-992563 Length:680 Species:Xenopus tropicalis


Alignment Length:593 Identity:283/593 - (47%)
Similarity:385/593 - (64%) Gaps:47/593 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LQSAQN----RVYIKNGEIVNHDKSFKADVYIEDGIIKFVGPSSEITIPGGVRTIDASGLMIIPG 75
            ||...|    |:.||.|.|:|.|:||.||||.|||:||.:|  ..:.:||||:||:|:|.|:|||
 Frog   114 LQGQHNGKSDRLLIKGGRIINDDQSFYADVYFEDGLIKQIG--ENLIVPGGVKTIEANGRMVIPG 176

  Fly    76 GIDPHTHMQLPFGGAVAVDDFYHGTKAAVAGGTTMIIDFVLPNKHESMIEAYDKWRSWADPKVCC 140
            |||.:|::|.|:.|...:||||.|||||||||||||||.|:|:...:::..::||...||.|.||
 Frog   177 GIDVNTYLQKPYLGMSTLDDFYQGTKAAVAGGTTMIIDHVVPDPGSNLLSCFEKWHEVADTKSCC 241

  Fly   141 DYGLHVGITWWSKSVSEEIGILCKELGVNSFKTFMAYKGLYQLNDSDLLDVFERIRHLNGVAMVH 205
            ||.|||.||.|...:.||:.||.::.|||||:.:||||.|||:.||.|.::|..::.|..|.|||
 Frog   242 DYSLHVDITNWYDGIREELDILIQDKGVNSFQVYMAYKDLYQMTDSQLYEIFMYLKGLGAVVMVH 306

  Fly   206 AENGDIIAKNTQRLLAEGINGPEGHELSRPEEVEAEAVHRACVLAHQADCPLYVVHVMSKSAGIE 270
            |||||:||:..:|:|..||.|||||.||||||:|||||.||..:|.:.:||:|:..||||||...
 Frog   307 AENGDLIAQEQKRILEMGITGPEGHALSRPEELEAEAVFRAITIASRINCPVYITKVMSKSASDV 371

  Fly   271 LARARHRYRGRYIMGETLAAALGTDATCCQHLGFDAEAAHVLSPPLRPDKTTPEFLMKLLANDDL 335
            :|:||.  :|..:.||.:.|:||||.|......:...||.|.||||.||.|||::|..|||..||
 Frog   372 IAQARK--KGALVFGEPITASLGTDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLNSLLACGDL 434

  Fly   336 QLTGSDNCTFNKEHKALGKGDFTKIPNGVNGVEDRMSLVWEKGVHAGLLDPCRFVAVTSTNAAKI 400
            |:|||.:|:::...||:||.:||.||.||||:|:|||:||:|.|..|.:|..:||||||||||||
 Frog   435 QVTGSGHCSYSTAQKAIGKDNFTLIPEGVNGIEERMSIVWDKAVATGKMDENQFVAVTSTNAAKI 499

  Fly   401 FNIYPQKGRIAVGSDADIVIWNPNATRTISKDTHHHACDFNIFEGMTVHGVCEFVLVRGRICAER 465
            ||:||:|||||||||||:|||:|:..:.:|..||..|.::||||||...|....|:.:|:|..|.
 Frog   500 FNLYPRKGRIAVGSDADVVIWDPDKIKAVSAKTHKSAVEYNIFEGMECRGAPLMVISQGKIVYED 564

  Fly   466 GNVRVAEGFGRFIPTPVRPPFVYDIIEGKVQSQPEEQHEEKQNGSMAKRFAELDIQIPVQEPIS- 529
            ||:.|.:|.|||||....|.::|..|  |:::                       ::...||:| 
 Frog   565 GNLHVNQGMGRFIPRKPFPEYIYQRI--KIRN-----------------------KVAGLEPVSR 604

  Fly   530 AMLAG---------NLAMPAEGSLCSTPSVRGRVDGKRDLQESSFSIS--EELDRSGVRACIKVK 583
            .|..|         ..|.||. |..|:|| :.:....|:|.:|:||:|  ::.|.:..|...::.
 Frog   605 GMYDGPVYEVPAPPKYATPAP-SAKSSPS-KPQPPPVRNLHQSNFSLSGAQKDDTNPRRTGHRIV 667

  Fly   584 NPPGGKSS 591
            |||||:|:
 Frog   668 NPPGGRSN 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CRMPNP_730954.2 D-HYD 22..475 CDD:238639 244/452 (54%)
PRK09060 24..483 CDD:181632 249/458 (54%)
crmp1NP_001072314.1 D-HYD 125..574 CDD:238639 244/452 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I11922
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 596 1.000 Inparanoid score I955
OMA 1 1.010 - - QHG54576
OrthoDB 1 1.010 - - D174151at33208
OrthoFinder 1 1.000 - - FOG0000315
OrthoInspector 1 1.000 - - otm47515
Panther 1 1.100 - - O PTHR11647
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X218
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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