DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG2931 and PUB1

DIOPT Version :10

Sequence 1:NP_649552.1 Gene:CG2931 / 40673 FlyBaseID:FBgn0037342 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_014382.1 Gene:PUB1 / 855716 SGDID:S000004961 Length:453 Species:Saccharomyces cerevisiae


Alignment Length:262 Identity:64/262 - (24%)
Similarity:103/262 - (39%) Gaps:44/262 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 QNSQHKLQHHQGNGGSRLTVPPPPMPPPPTFMSTFVPTGSGGGSSKAMSATPVVLSSAPKLYQCR 107
            :|::.  ||.|......:.|..|.....|             .|:...|...|.:....:..:..
Yeast     3 ENNEE--QHQQQQQQQPVAVETPSAVEAP-------------ASADPSSEQSVAVEGNSEQAEDN 52

  Fly   108 QSVHVPTVAAAPSI----------------------DINAVSFDVTQKLKKLK--AEKSGPNPIA 148
            |..:.|:|..|.:|                      ||....|.|...:..:|  .:|:..| :.
Yeast    53 QGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKN-VN 116

  Fly   149 EEAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDLGNDVNDEV 213
            ...::..::..|..:.||...|:.:...|:|.    |...|.....||.|.:|.|||..:|:||.
Yeast   117 YAFVEYHQSHDANIALQTLNGKQIENNIVKIN----WAFQSQQSSSDDTFNLFVGDLNVNVDDET 177

  Fly   214 LTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGSRPIKLRKSTWRQ 278
            |...|..|||:....|:.|.:||.|:|:|||||....|...||..|.|:.:..||:::..:..|.
Yeast   178 LRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242

  Fly   279 RS 280
            .:
Yeast   243 NN 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2931NP_649552.1 RRM_RBM42 192..274 CDD:409817 33/81 (41%)
PUB1NP_014382.1 RRM1_PUB1 77..150 CDD:410026 13/77 (17%)
RRM2_PUB1 161..240 CDD:410031 31/78 (40%)
RRM3_PUB1 341..414 CDD:410033
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.