DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2931 and CG34354

DIOPT Version :10

Sequence 1:NP_649552.1 Gene:CG2931 / 40673 FlyBaseID:FBgn0037342 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_001097953.2 Gene:CG34354 / 5740528 FlyBaseID:FBgn0085383 Length:550 Species:Drosophila melanogaster


Alignment Length:203 Identity:51/203 - (25%)
Similarity:86/203 - (42%) Gaps:31/203 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 SKAMSATPVVLSSAPKLYQCRQSVHVP----TVAAAPSIDINAVSFDVTQKLKKLKAEKSGPNPI 147
            |..|...|.:...||   |.....|.|    .:|..|:....|.:....|.:.....:.:|..  
  Fly     5 STLMMPAPTIAMGAP---QITMGPHKPPETKLLAIHPAAAAAAAAQQQQQSVTAAHLQHNGQQ-- 64

  Fly   148 AEEAIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRIFCGDLGNDVNDE 212
                    :.|...|..|.::::::.::  ::.|.         :...:.|.||.|||..::..:
  Fly    65 --------QHSQQQQQQQMSQQQQQQQQ--QLVGN---------NSKPEQFHIFVGDLSAEIETQ 110

  Fly   213 VLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADFIRAMKEMDGRYVGSRPIKLRKSTWR 277
            .|...|..|......|||||.:|.||||:|||||.:.::...|:..|:|:::|||.|   ::.|.
  Fly   111 QLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSI---RTNWA 172

  Fly   278 QRSLDVVK 285
            .|.....|
  Fly   173 TRKPPATK 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2931NP_649552.1 RRM_RBM42 192..274 CDD:409817 31/81 (38%)
CG34354NP_001097953.2 PABP-1234 <90..420 CDD:130689 34/94 (36%)
RRM2_TIA1_like 97..171 CDD:409789 30/76 (39%)
RRM3_TIA1_like 202..276 CDD:409790
Blue background indicates that the domain is not in the aligned region.

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