DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2931 and pAbp

DIOPT Version :10

Sequence 1:NP_649552.1 Gene:CG2931 / 40673 FlyBaseID:FBgn0037342 Length:302 Species:Drosophila melanogaster
Sequence 2:NP_476667.1 Gene:pAbp / 37070 FlyBaseID:FBgn0265297 Length:634 Species:Drosophila melanogaster


Alignment Length:180 Identity:43/180 - (23%)
Similarity:84/180 - (46%) Gaps:29/180 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   126 VSFDVTQKLKKLKAEKSGPNPIAEEAIKAARASSALQSFQTTERKKKDRKTVR---IAGGTVWED 187
            |:|:.|:..:......:|.:....:::..|||....:..|..:||.::.|..|   :.|      
  Fly   228 VAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFG------ 286

  Fly   188 TSLADWPDDDFRIFCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPADF 252
                      ..::..:|.:.::|:.|...|:.:.:...|:|:.|:. |:|||||||.|...::.
  Fly   287 ----------VNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEA 340

  Fly   253 IRAMKEMDGRYVGSRPIKLRKSTWRQRSLDVVKKKEREKQVLLQAFNSMT 302
            ..|:.|::||.|||:|:.:..:.         :|:||:..:..|....||
  Fly   341 TCAVTELNGRVVGSKPLYVALAQ---------RKEERKAHLASQYMRHMT 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2931NP_649552.1 RRM_RBM42 192..274 CDD:409817 24/81 (30%)
pAbpNP_476667.1 PABP-1234 2..625 CDD:130689 43/180 (24%)

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