DRSC/TRiP Functional Genomics Resources

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Protein Alignment LYN and Lyn

DIOPT Version :9

Sequence 1:XP_011515831.1 Gene:LYN / 4067 HGNCID:6735 Length:682 Species:Homo sapiens
Sequence 2:NP_110484.1 Gene:Lyn / 81515 RGDID:621017 Length:512 Species:Rattus norvegicus


Alignment Length:477 Identity:455/477 - (95%)
Similarity:466/477 - (97%) Gaps:0/477 - (0%)


- Green bases have known domain annotations that are detailed below.


Human   206 PPRNFHRERVPESQLLPGQRFQTKDPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWW 270
            |..|..:..|||||||||||||.||||||||||||||||||||||||||||||||||||||||||
  Rat    36 PTSNKQQRPVPESQLLPGQRFQAKDPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWW 100

Human   271 KAKSLLTKKEGFIPSNYVAKLNTLETEEWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSF 335
            |||||.:|:|||||||||||:||||||||||||||||||||||||||||||||||||||||||||
  Rat   101 KAKSLSSKREGFIPSNYVAKVNTLETEEWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSF 165

Human   336 SLSVRDFDPVHGDVIKHYKIRSLDNGGYYISPRITFPCISDMIKHYQKQADGLCRRLEKACISPK 400
            ||||||:||:|||||||||||||||||||||||||||||||||||||||:|||||||||||||||
  Rat   166 SLSVRDYDPMHGDVIKHYKIRSLDNGGYYISPRITFPCISDMIKHYQKQSDGLCRRLEKACISPK 230

Human   401 PQKPWDKDAWEIPRESIKLVKRLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMK 465
            |||||||||||||||||||||:|||||||||||||||||||||||||||||||.|||||||||||
  Rat   231 PQKPWDKDAWEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSAQAFLEEANLMK 295

Human   466 TLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER 530
            |||||||||||||||:|||||||||:|||||||||||||||.|||||||||||||||||||||||
  Rat   296 TLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGSKVLLPKLIDFSAQIAEGMAYIER 360

Human   531 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSD 595
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   361 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSD 425

Human   596 VWSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMPRVENCPDELYDIMKMCWKEKAEERPTF 660
            |||||||||||||||||||||||||||||||||||||||:|||||||||||||||||.|||||||
  Rat   426 VWSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMPRMENCPDELYDIMKMCWKESAEERPTF 490

Human   661 DYLQSVLDDFYTATEGQYQQQP 682
            ||||||||||||||||||||||
  Rat   491 DYLQSVLDDFYTATEGQYQQQP 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LYNXP_011515831.1 SH3_Lyn 237..292 CDD:212937 51/54 (94%)
SH2_Src_Lyn 295..395 CDD:198227 96/99 (97%)
PTKc_Lyn 409..680 CDD:270657 263/270 (97%)
Pkinase_Tyr 417..667 CDD:285015 242/249 (97%)
LynNP_110484.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50 6/13 (46%)
SH3_Lyn 67..122 CDD:212937 51/54 (94%)
SH2_Src_Lyn 125..225 CDD:198227 96/99 (97%)
PTKc_Lyn 239..510 CDD:270657 263/270 (97%)
Pkinase_Tyr 247..497 CDD:285015 242/249 (97%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C83687986
Domainoid 1 1.000 496 1.000 Domainoid score I7392
eggNOG 1 0.900 - - E2759_KOG0197
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55649
Inparanoid 1 1.050 1019 1.000 Inparanoid score I5297
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG41015
OrthoDB 1 1.010 - - D102936at32523
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 1 1.000 - - oto136052
orthoMCL 1 0.900 - - OOG6_100661
Panther 1 1.100 - - LDO PTHR24418
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X11610
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1818.270

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