DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LYN and Lyn

DIOPT Version :9

Sequence 1:XP_011515831.1 Gene:LYN / 4067 HGNCID:6735 Length:682 Species:Homo sapiens
Sequence 2:NP_001104566.1 Gene:Lyn / 17096 MGIID:96892 Length:512 Species:Mus musculus


Alignment Length:477 Identity:456/477 - (95%)
Similarity:468/477 - (98%) Gaps:0/477 - (0%)


- Green bases have known domain annotations that are detailed below.


Human   206 PPRNFHRERVPESQLLPGQRFQTKDPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWW 270
            |..|..:..|||..|||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse    36 PTSNKQQRPVPEFHLLPGQRFQTKDPEEQGDIVVALYPYDGIHPDDLSFKKGEKMKVLEEHGEWW 100

Human   271 KAKSLLTKKEGFIPSNYVAKLNTLETEEWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSF 335
            |||||.:|:|||||||||||:||||||||||||||||||||||||||||||||||||||||||||
Mouse   101 KAKSLSSKREGFIPSNYVAKVNTLETEEWFFKDITRKDAERQLLAPGNSAGAFLIRESETLKGSF 165

Human   336 SLSVRDFDPVHGDVIKHYKIRSLDNGGYYISPRITFPCISDMIKHYQKQADGLCRRLEKACISPK 400
            ||||||:||:|||||||||||||||||||||||||||||||||||||||:|||||||||||||||
Mouse   166 SLSVRDYDPMHGDVIKHYKIRSLDNGGYYISPRITFPCISDMIKHYQKQSDGLCRRLEKACISPK 230

Human   401 PQKPWDKDAWEIPRESIKLVKRLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMK 465
            |||||||||||||||||||||:|||||||||||||||||||||||||||||||||||||||||||
Mouse   231 PQKPWDKDAWEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMK 295

Human   466 TLQHDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER 530
            |||||||||||||||:|||||||||:|||||||||||||||||||||||||||||||||||||||
Mouse   296 TLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIER 360

Human   531 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSD 595
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Mouse   361 KNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSD 425

Human   596 VWSFGILLYEIVTYGKIPYPGRTNADVMTALSQGYRMPRVENCPDELYDIMKMCWKEKAEERPTF 660
            ||||||||||||||||||||||||||||:||||||||||:|||||||||||||||||||||||||
Mouse   426 VWSFGILLYEIVTYGKIPYPGRTNADVMSALSQGYRMPRMENCPDELYDIMKMCWKEKAEERPTF 490

Human   661 DYLQSVLDDFYTATEGQYQQQP 682
            ||||||||||||||||||||||
Mouse   491 DYLQSVLDDFYTATEGQYQQQP 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LYNXP_011515831.1 SH3_Lyn 237..292 CDD:212937 51/54 (94%)
SH2_Src_Lyn 295..395 CDD:198227 96/99 (97%)
PTKc_Lyn 409..680 CDD:270657 265/270 (98%)
Pkinase_Tyr 417..667 CDD:285015 244/249 (98%)
LynNP_001104566.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..45 2/8 (25%)
SH3_Lyn 67..122 CDD:212937 51/54 (94%)
SH2_Src_Lyn 125..225 CDD:198227 96/99 (97%)
PTKc_Lyn 239..510 CDD:270657 265/270 (98%)
Pkinase_Tyr 247..497 CDD:285015 244/249 (98%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C83964338
Domainoid 1 1.000 500 1.000 Domainoid score I7711
eggNOG 1 0.900 - - E2759_KOG0197
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55649
Inparanoid 1 1.050 1016 1.000 Inparanoid score I5684
Isobase 00.000 Not matched by this tool.
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG41015
OrthoDB 1 1.010 - - D102936at32523
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 1 1.000 - - oto119756
orthoMCL 1 0.900 - - OOG6_100661
Panther 1 1.100 - - LDO PTHR24418
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R10566
SonicParanoid 1 1.000 - - X11610
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1919.300

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