DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snm1 and CPSF100

DIOPT Version :10

Sequence 1:NP_649548.1 Gene:Snm1 / 40669 FlyBaseID:FBgn0037338 Length:763 Species:Drosophila melanogaster
Sequence 2:NP_197776.1 Gene:CPSF100 / 832453 AraportID:AT5G23880 Length:739 Species:Arabidopsis thaliana


Alignment Length:573 Identity:96/573 - (16%)
Similarity:166/573 - (28%) Gaps:233/573 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   277 VDGFQF----------------------GEIEGV--THYFLTHFHADHY----IGLTKKFCHPLY 313
            :|||.|                      ..|:.|  :|....|..|..|    :||:.    |:|
plant    25 IDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLLSHPDTLHIGALPYAMKQLGLSA----PVY 85

  Fly   314 VS-PISARLVRTFIK--LDETHIHEIDVDQTLDVD----------------------GVQVTALE 353
            .: |:....:.|...  |....:.:.|:....|:|                      |:.:....
plant    86 ATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDIDSAFQNVIRLTYSQNYHLSGKGEGIVIAPHV 150

  Fly   354 ANHCPGALMFFFKLSSGECILHTGDF------------------------------------RAS 382
            |.|..|..::.. ...||.:::..|:                                    |..
plant   151 AGHMLGGSIWRI-TKDGEDVIYAVDYNHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQ 214

  Fly   383 ADMESLPIFWNHSNID----------------LLYLDTTYMNKNYDF-----CHQSESVDRAVDL 426
            .|.|.|.....|..:.                ||.|:..:..:.:.|     .:.|.|   .:|.
plant   215 RDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHWSQRGFSFPIYFLTYVSSS---TIDY 276

  Fly   427 VRAFLEKNAAKRILIVCGSYVIGKEKIWL--ALAKEFTMRVWTESNRSTA------VRCLNWPDL 483
            |::|||                     |:  :::|.|      |::|..|      ...:|..||
plant   277 VKSFLE---------------------WMSDSISKSF------ETSRDNAFLLRHVTLLINKTDL 314

  Fly   484 DSVLTEDRSGANLHVIAMGKISYPSLVDYFTEF-EDQYDMLLGIRPSGWEKNSKPSYGKRISTIG 547
            |:.    ..|..:.:.:|..:......:.|.|: .|..:::|                       
plant   315 DNA----PPGPKVVLASMASLEAGFAREIFVEWANDPRNLVL----------------------- 352

  Fly   548 IEYSEHSSYKELERFVRFLKPKRVISTVPVGRDLYVTGEVPIRWYKYEGRASMLRTGFQPSISTF 612
              ::|...:..|.|.::...|.:.:. |.:.:.:.:.||..|.:.:.:.|.              
plant   353 --FTETGQFGTLARMLQSAPPPKFVK-VTMSKRVPLAGEELIAYEEEQNRL-------------- 400

  Fly   613 LATPKRAFAKFSADTEMFLSPVDENASKGSEDKKDDDRESVV---PTNHVTIISDTPEECFQTDS 674
                ||       :..:..|.|.|..:|.|....|:..|.::   .|.|..|           .|
plant   401 ----KR-------EEALRASLVKEEETKASHGSDDNSSEPMIIDTKTTHDVI-----------GS 443

  Fly   675 KIPVKNEPLAPDTSPNSEIVAQLNAMESEIPYV----EIDIKNETIAPDAVLI 723
            ..|...:.|.....|.|..||.:      .||.    |.|...|.|.||..:|
plant   444 HGPAYKDILIDGFVPPSSSVAPM------FPYYDNTSEWDDFGEIINPDDYVI 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snm1NP_649548.1 SNM1A-1C-like_MBL-fold 252..408 CDD:293831 35/235 (15%)
DRMBL 481..578 CDD:429512 14/97 (14%)
CPSF100NP_197776.1 CPSF2-like_MBL-fold 8..203 CDD:293851 27/182 (15%)
Beta-Casp 243..366 CDD:214983 30/181 (17%)
RMMBL 533..593 CDD:462191
CPSF100_C 610..736 CDD:463836
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.