Protein Alignment Snm1 and cpsf3

DIOPT Version :10

• Sequence 1: NP_649548.1
• Gene: Snm1 / 40669
• FlyBaseID: FBgn0037338
• Length: 763
• Species: Drosophila melanogaster
• Sequence 2: NP_001003836.1
• Gene: cpsf3 / 324554
• ZFINID: ZDB-GENE-030131-3275
• Length: 690
• Species: Danio rerio
• Alignment Length: 536
• Identity: 104/536 - (19%)
• Similarity: 185/536 - (34%)
• Gaps: 173/536 - (32%)

  Fly   293 LTHFHADHYIGLTKKFCHPLYVSPISARLVRTF---------------------IKLDETHIHEI 336
            ::|||.||...|      |.::...|.: .|||                     |..|:....|.
Zfish    76 ISHFHLDHCGAL------PWFLQKTSFK-GRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTET 133

  Fly   337 DVDQTLD------------VDGVQVTALEANHCPGALMFFFKLSSGECILHTGDFRASADMESLP 389
            |:::::|            |.|::.....|.|..||.||..:: :|..:|:||||....|...:.
Zfish   134 DLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEI-AGVKLLYTGDFSRQEDRHLMA 197

  Fly   390 IFWNHSNIDLLYLDTTYMNKNYD--------FCHQ-SESVDRAVDLVRAFLEKNAAKRILIVCGS 445
            ........|:|..::||....::        ||:. .:.|:|....:........|:.:|::...
Zfish   198 AEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDE 262

  Fly   446 YVIGKEKIW--------------LALAKEFTMRVWTESNRSTAVRCLNWPDLDSVLTEDRSGANL 496
            |       |              .:|||: .|.|:     .|.|..:|    |.:    |...|:
Zfish   263 Y-------WQNHPELHDIPIYYASSLAKK-CMAVY-----QTYVNAMN----DKI----RKAINI 306

  Fly   497 -HVIAMGKISYPSLVDYFTEFEDQYDMLL-GIRPSG--------W---EKN-------------- 534
             :......||....:|:|.:......|.. |:..||        |   ::|
Zfish   307 NNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLA 371

  Fly   535 ----SKPSYGKRISTIG------------IEYSEHSSYKELERFVRFLKPKRVISTVPVGRDLYV 583
                |:|   :.|:|:.            |.:|.|:.|::...|:|.|||..||         .|
Zfish   372 KHIMSEP---EEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI---------LV 424

  Fly   584 TGEVPIRWYKYEGRASMLRTGF------QPSISTFLATPKRAFA---KFSAD--TEMFLSPVDEN 637
            .||        :...:.|:...      ...:...:..|:...|   .|..:  .::..|..|:.
Zfish   425 HGE--------QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKK 481

  Fly   638 ASKGSE-----DKKDDDRESVVPTNHVTIISDTPEECFQTDSKIPVKNEPLAPDTSPNSEIVAQL 697
            .|:|..     .||:.....:.|::    :|:..:....|     ||.....|.|.|...:::||
Zfish   482 CSQGQRVSGILVKKNFSYHILSPSD----LSNYTDLAMST-----VKQTQAIPFTGPFPLLLSQL 537

  Fly   698 NAMESEIPYVEIDIKN 713
            ..:..::..:|:..|:
Zfish   538 RHLTGDVEEIEMSEKS 553

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Snm1	NP_649548.1	SNM1A-1C-like_MBL-fold	252..408	CDD:293831	35/147 (24%)
		DRMBL	481..578	CDD:429512	28/139 (20%)
cpsf3	NP_001003836.1	CPSF3-like_MBL-fold	19..212	CDD:293850	33/143 (23%)
		YSH1	21..428	CDD:440849	82/400 (21%)
		CPSF73-100_C	486..688	CDD:463330	14/77 (18%)