DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snm1 and Dclre1b

DIOPT Version :10

Sequence 1:NP_649548.1 Gene:Snm1 / 40669 FlyBaseID:FBgn0037338 Length:763 Species:Drosophila melanogaster
Sequence 2:NP_598626.2 Gene:Dclre1b / 140917 MGIID:2156057 Length:541 Species:Mus musculus


Alignment Length:421 Identity:117/421 - (27%)
Similarity:176/421 - (41%) Gaps:78/421 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 VVEGTSFCVDGFQFGEIEGVTHYFLTHFHADHYIGLTKKFCHPLYVSPISARLVRTFIKLDETHI 333
            |:..|...||.:..........:||||.|.||.:||:..:..|||.|||:|.|:...:::.:..|
Mouse     5 VIPQTPIAVDFWSLRRAGSARLFFLTHMHCDHTVGLSSTWARPLYCSPITACLLHRRLQVSKHWI 69

  Fly   334 HEIDVDQT----LDVDG---VQVTALEANHCPGALMFFFKLSSGECILHTGDFRASADMESLPIF 391
            ..::|.::    ||..|   :.||.::||||||::||.|:...| .||:|||||.:..|...|..
Mouse    70 RALEVGESHVLPLDEIGQETMTVTLIDANHCPGSVMFLFEGYFG-TILYTGDFRYTPSMLKEPAL 133

  Fly   392 WNHSNIDLLYLDTTYMNKNYDFCHQSESVDRAVDLVRAFLEKNAAKRILIVCGSYVIGKEKIWLA 456
            .....|..||||.|..|.......:.|:..:.|.|:|.|.:.|      |..|.|.:|||.:...
Mouse   134 ILGKQIHTLYLDNTNCNPALVLPSRQEATQQIVQLIRQFPQHN------IKIGLYSLGKESLLEQ 192

  Fly   457 LAKEFTMRVWTESNRSTAVRCLNWPDLDSVLTEDRSGANLHVIAMGKISYPSLVDYFTEFEDQYD 521
            ||.||...|.....|...|:.|...|   |.|.:.....:|.:...:|.:.:::.:     :|..
Mouse   193 LALEFRTWVVLSPQRLELVQLLGLAD---VFTVEEEAGRIHAVDHTEICHSAMLQW-----NQSH 249

  Fly   522 MLLGIRPSGWEKNSKPSYGKRISTIGIEYSEHSSYKELERFVRFLKPKRVISTV---PVGRDLYV 583
            ..:.|.|:     |:.......|...:.||:||||.||..||..|:|.:|:..|   |.|.    
Mouse   250 PTIAIFPT-----SRKVRSPHPSIYTVPYSDHSSYSELRAFVAALRPCQVVPIVHQKPCGE---- 305

  Fly   584 TGEVPIRWYKYEGRASMLRTGFQPSISTFLATP-----------------------KRAFAKFSA 625
                                .||.|:|..||.|                       :|...:...
Mouse   306 --------------------FFQDSLSPRLAMPLIPHSVQQYMSSSSRKTNVLWQLERRLKRPRT 350

  Fly   626 DTEMFLSPVDE-NASKGSEDKKDDDRESVVP 655
            ...:|.||.:: |..|...|.|...:|::.|
Mouse   351 QGVVFESPEEKANQVKVDRDSKKHKKENLSP 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snm1NP_649548.1 SNM1A-1C-like_MBL-fold 252..408 CDD:293831 53/145 (37%)
DRMBL 481..578 CDD:429512 25/99 (25%)
Dclre1bNP_598626.2 SNM1A-1C-like_MBL-fold 6..151 CDD:293831 52/145 (36%)
DRMBL 216..298 CDD:429512 23/94 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 455..475
apollo_TRF2_binding 492..524 CDD:212560
TBM 492..507
Blue background indicates that the domain is not in the aligned region.

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