DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snm1 and dclre1b

DIOPT Version :10

Sequence 1:NP_649548.1 Gene:Snm1 / 40669 FlyBaseID:FBgn0037338 Length:763 Species:Drosophila melanogaster
Sequence 2:XP_002932166.1 Gene:dclre1b / 100170639 XenbaseID:XB-GENE-981156 Length:517 Species:Xenopus tropicalis


Alignment Length:510 Identity:135/510 - (26%)
Similarity:224/510 - (43%) Gaps:108/510 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 VVEGTSFCVDGFQFGEIEGVTHYFLTHFHADHYIGLTKKFCHPLYVSPISARLVRTFIKLDETHI 333
            ::..|...||.:|......:..:||:|.|:||.:||:..:..|||.||::|::::..:::..|.|
 Frog     5 LLPNTPIAVDFWQTRRCSHIRLFFLSHMHSDHTMGLSSTWNRPLYCSPVTAKVLKYKLQVSNTWI 69

  Fly   334 HEIDVDQ----TLDVDGVQ---VTALEANHCPGALMFFFKLSSGECILHTGDFRASADMESLPIF 391
            :.:::.:    .||..|::   ||.::||||||::||.|:...| .||:|||||.|..|...|..
 Frog    70 NPLEIGEPHMLPLDNKGLETLTVTLIDANHCPGSVMFLFEGYFG-TILYTGDFRYSPYMFCYPPL 133

  Fly   392 WNHSNIDLLYLDTTYMNKNYDFCHQSESVDRAVDLVRAFLEKNAAKRILIVCGSYVIGKEKIWLA 456
            .|.:.||:||||    |.|.|...:..|...|.::::..:||:....|:|  |.|.||||.:.:.
 Frog   134 SNKTKIDVLYLD----NTNCDPEQKLPSRLEATNMIKEIIEKHPDHDIMI--GVYNIGKESLLVD 192

  Fly   457 LAKEFTMRVWTESNRSTAVRCLNWPDLDSVLTEDRSGANLHVIAMGKISYPSLVDYFTEFEDQYD 521
            |||.|...|.....|...:..|   ::::|.|.:.....:|::...:::|.::|.:     ::..
 Frog   193 LAKTFKTWVVVSPQRLELLHIL---EMENVFTIEEGAGRIHLVDQSEVNYINMVRW-----NRVC 249

  Fly   522 MLLGIRPSG-----WEKNSKPSYGKRISTIGIEYSEHSSYKELERFVRFLKPKRVISTVPVGRDL 581
            ..|.|.|:.     |.|:...          :.||:|||::||:.||..|||..|:..|..    
 Frog   250 PTLAILPTSRKVKLWHKDVHV----------VPYSDHSSFEELQEFVSRLKPSSVVPVVKA---- 300

  Fly   582 YVTGEVPIRWY----KYEGRASMLRTGF------QPSISTFLA-----TPKRAFAKFSADTEMFL 631
             ...|...:.|    |.|...:.:....      |.|::...|     .|||   |......:|.
 Frog   301 -KACETYFKQYLCISKNEKHCTKIPESVKDCMNRQNSLTRCDAIHSCNAPKR---KHLPKGVVFE 361

  Fly   632 S------PVDENASKG------------SED------KKDDDRESVVPTNHVTIISDTPEECFQT 672
            |      |.|.|..|.            ..|      |:...|.|.:|....|::          
 Frog   362 SPEKRTHPADFNGQKSPLSASYGESILLGHDLVNPSLKEQQGRSSELPLTESTML---------- 416

  Fly   673 DSKIPVKNEPLAPDTSPNSEIVAQLNAMESEIP---YVEIDIKNETIAPDAVLIP 724
               :|.:....:| ::|:.:|.       ||:|   |.....|:||:..|..|.|
 Frog   417 ---VPDRERSPSP-SNPSGDIT-------SEMPSLIYWSPKYKSETVTSDNSLSP 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snm1NP_649548.1 SNM1A-1C-like_MBL-fold 252..408 CDD:293831 52/145 (36%)
DRMBL 481..578 CDD:429512 24/101 (24%)
dclre1bXP_002932166.1 SNM1A-1C-like_MBL-fold 6..151 CDD:293831 54/149 (36%)
DRMBL 215..298 CDD:429512 23/97 (24%)
apollo_TRF2_binding 476..510 CDD:212560
Blue background indicates that the domain is not in the aligned region.

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