DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pcmt and pcmtd1

DIOPT Version :9

Sequence 1:NP_536756.1 Gene:Pcmt / 40668 FlyBaseID:FBgn0086768 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_001025238.2 Gene:pcmtd1 / 327176 ZFINID:ZDB-GENE-030131-5387 Length:359 Species:Danio rerio


Alignment Length:234 Identity:60/234 - (25%)
Similarity:98/234 - (41%) Gaps:37/234 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPR----NPYMDAPQPIGGGVTISAPHMH 65
            |.|.:|:|||..||:...|.::.|.||.:..||..|...    |.|.|.... .|.:.:|||.::
Zfish     6 SAGEDNDDLIDNLKEAQYIRTERVEQAFRAIDRGDYYLEGYRDNAYKDLAWK-HGNIHLSAPCIY 69

  Fly    66 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL-- 128
            :..:|.|:  |:.|...|::|||:|||:......|...||:.     |:|...::|..:...|  
Zfish    70 SEVMEALK--LQQGLSFLNLGSGTGYLSTMVGLIIGPFGVNH-----GVELHKDVVEYANERLDD 127

  Fly   129 ---NTDDRSMLD-------SGQLLIVEGDGRKGYPPNAPYNAIHVGAAA-PDTPTELINQLASGG 182
               |:|.....:       .|..|.:..|..:       |:.|:.||.. .|....:...|..||
Zfish   128 FIKNSDSFDRFEFCEPHFVVGNCLEISSDSHQ-------YDRIYCGAGVQKDHENYMKILLKVGG 185

  Fly   183 RLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 221
            .|::|:     ...:.|..:......|...::.|.:.||
Zfish   186 ILVMPI-----EDQLTQIIRTGQSSWESKNILAVSFAPL 219

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcmtNP_536756.1 PCMT 8..221 CDD:250389 56/229 (24%)
AdoMet_MTases 13..223 CDD:302624 56/226 (25%)
pcmtd1NP_001025238.2 PCMT 11..219 CDD:250389 56/227 (25%)
AdoMet_MTases 14..222 CDD:302624 56/226 (25%)
SOCS <335..356 CDD:295349
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2518
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.