DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pcmt and pcm2

DIOPT Version :10

Sequence 1:NP_536756.1 Gene:Pcmt / 40668 FlyBaseID:FBgn0086768 Length:226 Species:Drosophila melanogaster
Sequence 2:NP_595011.1 Gene:pcm2 / 2543383 PomBaseID:SPAC869.08 Length:230 Species:Schizosaccharomyces pombe


Alignment Length:229 Identity:96/229 - (41%)
Similarity:131/229 - (57%) Gaps:13/229 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAWRSVGANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMH 65
            |.|....::|..|::.|.:...:.:....:||..|.|..|.|.:||||:||.||.||||||||||
pombe     1 MFWSFNLSSNAALVQHLVESKFLTNQRAIKAMNATSRSFYCPLSPYMDSPQSIGYGVTISAPHMH 65

  Fly    66 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL-- 128
            |.||:.|...|:||...||:|||||||.|...|.:...|.     :.||||..:||..||.||  
pombe    66 ATALQELEPVLQPGCSALDIGSGSGYLVAAMARMVAPNGT-----VKGIEHIPQLVETSKKNLLK 125

  Fly   129 --NTDD--RSMLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG 189
              |.|:  ..|....:|.|..||||.|...:..::||||||:|.:.|.:|::||.|.|::::|:|
pombe   126 DINHDEVLMEMYKEKRLQINVGDGRMGTSEDEKFDAIHVGASASELPQKLVDQLKSPGKILIPIG 190

  Fly   190 PDGGSQYMQQYDKDANGKVEMTRLMGVMYVPLTD 223
            .  .||.:...:|:..||:....|..|.||||||
pombe   191 T--YSQNIYLIEKNEQGKISKRTLFPVRYVPLTD 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PcmtNP_536756.1 PCMT 8..221 CDD:395902 90/218 (41%)
pcm2NP_595011.1 PCMT 8..220 CDD:395902 90/218 (41%)

Return to query results.
Submit another query.