DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and GLR3.3

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_001322169.1 Gene:GLR3.3 / 840859 AraportID:AT1G42540 Length:933 Species:Arabidopsis thaliana


Alignment Length:1004 Identity:211/1004 - (21%)
Similarity:383/1004 - (38%) Gaps:212/1004 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 RHTASDNPSTYNIGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYDKTIRMDKNP---IKTVF 90
            |.|.|:.|....||.:.|       |.:.|..:        .|:...:....::.||   ..|.|
plant    19 RRTHSEKPKVVKIGSIFS-------FDSVIGKV--------AKIAIDEAVKDVNSNPDILSGTKF 68

  Fly    91 NV------CDKLIENRVYAVVVSHEQTSGDLSPAA------VSYTSGFYSIPVIGISSRDAAFSD 143
            :|      |...: ..|.|:....:...|.:.|..      :|:.:....:|::..:..|...|.
plant    69 SVSMQNSNCSGFM-GMVEALRFMEKDIVGIIGPQCSVVAHMISHMANELRVPLLSFAVTDPVMSP 132

  Fly   144 KNIHVSFLRTVPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGR---AILGRFQTTSQTYYDDVD 205
            ..... |:||.....:|.|....::..:.:.:||.:...|..||   |.|.             |
plant   133 LQFPY-FIRTTQSDLYQMDAIASIVDFYGWKEVIAVFVDDDFGRNGVAALN-------------D 183

  Fly   206 VRATVELIVEFEPKLESFT--------EHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYNMTGE 262
            ..|:..|.:.::..|...|        ..||.:...|.|:.:::..:|....:|::|....|.|.
plant   184 KLASRRLRITYKAGLHPDTAVNKNEIMNMLIKIMLLQPRIVVIHVYSELGFAVFKEAKYLGMMGN 248

  Fly   263 GHVWIVTEQALFSN------------NTPDGVLGLQLEHAHSD------------KG-------- 295
            |:|||.|:. |.:|            .|..|||.|:.....||            .|        
plant   249 GYVWIATDW-LSTNLDSSSPLPAERLETIQGVLVLRPHTPDSDFKREFFKRWRKMSGASLALNTY 312

  Fly   296 --HIRDSVYVLASAIKEM--------ISNETIAEAPKDCG----DSAVNWESGKRLFQYLKSRNI 346
              :..|||.:||..:.:.        .||.::.......|    ::...::.|:.|.:.:....:
plant   313 GLYAYDSVMLLARGLDKFFKDGGNISFSNHSMLNTLGKSGNLNLEAMTVFDGGEALLKDILGTRM 377

  Fly   347 TGETGQVAFDDNGDRIYAGYDVINI------------REQQKKHVVGKFSYDSMRAKMRMRINDS 399
            .|.|||:.|..:..|....||:||:            .......|:.:..|...:..|.......
plant   378 VGLTGQLQFTPDRSRTRPAYDIINVAGTGVRQIGYWSNHSGLSTVLPELLYTKEKPNMSTSPKLK 442

  Fly   400 EIIWPGKQRRKPEGIMIPTH---LRL---LTIEEKPFVYVRRMGDDEFRCEPDERPCPLFNNSDA 458
            .:||||:...||.|.:...:   |::   |.:..|.||...|                      .
plant   443 HVIWPGETFTKPRGWVFSNNGKELKIGVPLRVSYKEFVSQIR----------------------G 485

  Fly   459 TANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKE---WTGLIGELV 520
            |.|.|  :|:|||:.......:.:...:...|.|.               .||   :|.::..:.
plant   486 TENMF--KGFCIDVFTAAVNLLPYAVPVKFIPYGN---------------GKENPSYTHMVEMIT 533

  Fly   521 NERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVH 585
            ....|.:|..:.|...|.:.::|::|:...|:.::......:|...:||:||:..:|.:......
plant   534 TGNFDGVVGDVAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNSGAWAFLRPFNRLMWAVTGCCFL 598

  Fly   586 VVALVLYLLDRFSPFGRFKLSHSDSNEEKA---LNLSSAVWFAWGVLLNSGIGEGTPRSFSARVL 647
            .|.:|:::|:           |..::|.:.   ....:.:||::..:..:. .|.|..:....||
plant   599 FVGIVVWILE-----------HRTNDEFRGPPKRQCVTILWFSFSTMFFAH-RENTVSTLGRLVL 651

  Fly   648 GMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLTCATVKGSSVDMYFRRQV 712
             ::|....:||.:||||:|.:.|.:::..:.:.||...|.|:.    ......||..:.|.|.::
plant   652 -IIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLRERDD----PIGYQVGSFAESYLRNEL 711

  Fly   713 ELSNM----YRTMEANNYATAEQAIQD-VKKGKLMAFIWDSSRLEYEASKDCELVTAGELFGRSG 772
            .:|..    ..|.||  ||   :|::| ..||.:.|.:.:...:|...|.:|.....|:.|.:||
plant   712 NISESRLVPLGTPEA--YA---KALKDGPSKGGVAAIVDERPYVELFLSSNCAYRIVGQEFTKSG 771

  Fly   773 YGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIF-HGHVQQNCELFEKTPNTLGLKNMAGVF 836
            :|....:.||....::.||||..|:|.::::..:|:. :....:|.||   ..:.|.||:..|:|
plant   772 WGFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLMKNACTLENAEL---ESDRLHLKSFWGLF 833

  Fly   837 ILVGVGIAGGVGLIIIEVI---YKKHQVKKQKRLDIARHAADKWRGT---------IEKRKTIRA 889
            ::.||.....:.|..:::|   |||.......|.....|.:...|.|         .||.::...
plant   834 LICGVACLLALFLYFVQIIRQLYKKPTDDAIARDQQQNHDSSSMRSTRLQRFLSLMDEKEESKHE 898

  Fly   890 SLAMQRQYNVGLNSTHAPGTISLAVDKRR 918
            |  .:|:.:..:|.| :..|.|...|:.|
plant   899 S--KKRKIDGSMNDT-SGSTRSRGFDRER 924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 90/459 (20%)
ANF_receptor 58..371 CDD:279440 76/384 (20%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 88/418 (21%)
HisJ 451..>558 CDD:223904 19/109 (17%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 24/137 (18%)
Lig_chan 575..838 CDD:278489 65/271 (24%)
CaM_bdg_C0 854..882 CDD:287524 8/39 (21%)
GLR3.3NP_001322169.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

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