DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and GLR3.4

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_001030971.1 Gene:GLR3.4 / 839268 AraportID:AT1G05200 Length:959 Species:Arabidopsis thaliana


Alignment Length:942 Identity:212/942 - (22%)
Similarity:381/942 - (40%) Gaps:217/942 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VLLVAPIDAAQRHTASDN---------------PSTYNIGGVLSNSD-----SEEHFSTTIKHLN 62
            ||.|.|.:.|.|...|.|               ||:.|:|.:.:...     ::......:..:|
plant    25 VLWVVPKECACRSNFSRNSSSSSSSSLRPLRQRPSSVNVGALFTYDSFIGRAAKPAVKAAMDDVN 89

  Fly    63 FDQQYVPRKVTYYDKTIRM-----DKNPIKTVFNVCD---------KLIENRVYAVVVSHEQTSG 113
            .||..:        |.|::     |.|        |.         :|:||:|.|.:  ..|:||
plant    90 ADQSVL--------KGIKLNIIFQDSN--------CSGFIGTMGALQLMENKVVAAI--GPQSSG 136

  Fly   114 DLSPAAVSYTSGFYSIPVIGISSRDAAFSDKNIHVSFLRTVPPYYHQADVWLEMLSHFAYTKVII 178
              ....:||.:....:|::...:.|...|...... ||||....|.|.....:.||:..:.:||.
plant   137 --IAHMISYVANELHVPLLSFGATDPTLSSLQFPY-FLRTTQNDYFQMHAIADFLSYSGWRQVIA 198

  Fly   179 IHSSDTDGR---AILGRFQTTSQTYYDDVDVRATVELIVEFEPKL------ESFTEHLIDMKTAQ 234
            |...|..||   ::||             ||.|.....:.::..:      .|..:.|:.:...:
plant   199 IFVDDECGRNGISVLG-------------DVLAKKRSRISYKAAITPGADSSSIRDLLVSVNLME 250

  Fly   235 SRVYLMYASTEDAQVIFRDAGEYNMTGEGHVWIVTE---QALFS-----NNTPDGVLGLQLEHAH 291
            |||::::.:.:....:|..|....|...|:|||.|:   .|:.|     ::|.|.:.|:.....:
plant   251 SRVFVVHVNPDSGLNVFSVAKSLGMMASGYVWIATDWLPTAMDSMEHVDSDTMDLLQGVVAFRHY 315

  Fly   292 SDKGHIR------------------------DSVYVLASAIKEMI---SNETIAEAP---KDCGD 326
            :.:..::                        |||:::|.|:....   :|.|.:..|   |..|.
plant   316 TIESSVKRQFMARWKNLRPNDGFNSYAMYAYDSVWLVARALDVFFRENNNITFSNDPNLHKTNGS 380

  Fly   327 ----SAVN-WESGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKHVVGKFSYD 386
                ||:: :..|::..:.:...|.||.||.:.||.:.:|:...|:|:|: |......||.:|..
plant   381 TIQLSALSVFNEGEKFMKIILGMNHTGVTGPIQFDSDRNRVNPAYEVLNL-EGTAPRTVGYWSNH 444

  Fly   387 S-----------------MRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFV--- 431
            |                 ..|..|::    .||:||:..:.|.|.:.|.:.:.|.|.....|   
plant   445 SGLSVVHPETLYSRPPNTSTANQRLK----GIIYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYT 505

  Fly   432 -YVRRMGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLL---IE-LSKRINFTYDLALSPD 491
             ||.:          |:.|..:             ||||||:.   || |...:..||  .|..|
plant   506 DYVSK----------DKNPPGV-------------RGYCIDVFEAAIELLPYPVPRTY--ILYGD 545

  Fly   492 GQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILE 556
            |:      ||        ..:..|:.|:|.:..|:.|..:||...|..|::|::||...|:.::.
plant   546 GK------RN--------PSYDNLVNEVVADNFDVAVGDITIVTNRTRYVDFTQPFIESGLVVVA 596

  Fly   557 KKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEE----KALN 617
            ......|:..|||:||:..:|.:.......|..::::|:.     ||       |:|    ....
plant   597 PVKEAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWILEH-----RF-------NQEFRGPPRRQ 649

  Fly   618 LSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGI 682
            |.:..||::..:..|. .|.|..|....|| ::|....:||.:||||:|.:.|.:.:..:::.||
plant   650 LITIFWFSFSTMFFSH-RENTVSSLGRFVL-IIWLFVVLIINSSYTASLTSILTIRQLTSRIEGI 712

  Fly   683 NDARLRNTMENLTCATVKGSSVDMYFRRQVEL--SNMYRTMEANNYATAEQAIQDVKKGKLMAFI 745
            :..    ...|.......|:....|...::.:  |.:....:...|.:|.|  :....|.:.|.:
plant   713 DSL----VTSNEPIGVQDGTFARNYLINELNILPSRIVPLKDEEQYLSALQ--RGPNAGGVAAIV 771

  Fly   746 WDSSRLE-YEASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIF 809
            .:...:| ...:.:|:..|.|:.|.|:|:|...|:.||....::.|||:..|.|.:||:.::|:.
plant   772 DELPYIEVLLTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLN 836

  Fly   810 HGHVQQNCELFEKTPNTLGLKNMAGVFILVGV 841
            :.| :.:.::.....:.|.||:..|:|::.|:
plant   837 YKH-ECSMQISNSEDSQLSLKSFWGLFLICGI 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 103/489 (21%)
ANF_receptor 58..371 CDD:279440 81/378 (21%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 99/415 (24%)
HisJ 451..>558 CDD:223904 29/110 (26%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 34/138 (25%)
Lig_chan 575..838 CDD:278489 61/269 (23%)
CaM_bdg_C0 854..882 CDD:287524
GLR3.4NP_001030971.1 PBP1_GABAb_receptor_plant 62..450 CDD:380645 89/422 (21%)
Periplasmic_Binding_Protein_Type_2 <518..591 CDD:389745 28/88 (32%)
Lig_chan 615..869 CDD:365843 62/274 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 169 1.000 Inparanoid score I1556
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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