DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and GLUR2

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_001320141.1 Gene:GLUR2 / 829682 AraportID:AT4G35290 Length:912 Species:Arabidopsis thaliana


Alignment Length:1011 Identity:205/1011 - (20%)
Similarity:407/1011 - (40%) Gaps:236/1011 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LAIVLLVAPIDAAQRHTASDNPSTYNIG-----GVLSNSDSEEHFSTTIKHLNFDQQYV---PRK 71
            |:.::|:.  |......|...|...::|     |.|....:........:.:|.|..::   ..:
plant     8 LSFIVLIG--DGMISEGAGLRPRYVDVGAIFSLGTLQGEVTNIAMKAAEEDVNSDPSFLGGSKLR 70

  Fly    72 VTYYDKTIRMDKNPIKTVFNVCDKLIENRVYAVVVSHEQTSGDLSPAAVSYTSGFYSIPVIGISS 136
            :|.||    ..:|...|:......:   ...||.:...|||  :....:|:.:...|:|::..::
plant    71 ITTYD----AKRNGFLTIMGALQFM---ETDAVAIIGPQTS--IMAHVLSHLANELSVPMLSFTA 126

  Fly   137 RDAAFSDKNIHVSFLRTVPPYYHQADVWL-----EMLSHFAYTKVIIIHSSDTDGR---AILGRF 193
            .|.:.|...... |::|.|     :|::|     ||:|::.:::||.:::.|.:.|   ..||  
plant   127 LDPSLSALQFPF-FVQTAP-----SDLFLMRAIAEMISYYGWSEVIALYNDDDNSRNGITALG-- 183

  Fly   194 QTTSQTYYDDVDVR-------ATVELIVEFEPKLESFTEHLIDMKTAQSRVYLMYASTEDAQVIF 251
                    |:::.|       |.:.|.|......|...| |:.::..:|||.::....:..:.||
plant   184 --------DELEGRRCKISYKAVLPLDVVITSPREIINE-LVKIQGMESRVIIVNTFPKTGKKIF 239

  Fly   252 RDAGEYNMTGEGHVWIVTE--QALFSNNTP---------DGVLGLQLEHAHSDKG---------- 295
            .:|.:..|..:|:|||.|.  .:|..:..|         .|||.|::...:|.|.          
plant   240 EEAQKLGMMEKGYVWIATTWLTSLLDSVNPLPAKTAESLRGVLTLRIHTPNSKKKKDFVARWNKL 304

  Fly   296 ------------HIRDSVYVLASAIKEMI---SNETIAEAPKDC---GDSAVN------WESGKR 336
                        :..|:|:::|.|:|.::   :|.:.:..||..   |..::|      ::.|.:
plant   305 SNGTVGLNVYGLYAYDTVWIIARAVKRLLDSRANISFSSDPKLTSMKGGGSLNLGALSIFDQGSQ 369

  Fly   337 LFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKHVVGKFSY---------DSMRAKM 392
            ...|:.:.|:||.|||:.|..:...|...||:||:.:...:. :|.:|.         :|:..|:
plant   370 FLDYIVNTNMTGVTGQIQFLPDRSMIQPSYDIINVVDDGFRQ-IGYWSNHSGLSIIPPESLYKKL 433

  Fly   393 RMRINDSE----IIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDDEFRCEPDERPCPLF 453
            ..|.:.::    :.|||.....|.|.:.|.:.|.|           |:|      .||.      
plant   434 SNRSSSNQHLNNVTWPGGTSETPRGWVFPNNGRRL-----------RIG------VPDR------ 475

  Fly   454 NNSDATANEFCCR--------GYCIDLLIELSKRINF--TYDLALSPDGQFGHYILRNNTGAMTL 508
                |:..||..|        ||.||:.....|.|::  .::..|..||      |:|..     
plant   476 ----ASFKEFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDG------LKNPN----- 525

  Fly   509 RKEWTGLIGELVNERA----DMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTLVSFL 569
                   ..|.||...    |.:|..:.|..:|...::|::|:...|:.::......:.|..:||
plant   526 -------FNEFVNNVTIGVFDAVVGDIAIVTKRTRIVDFTQPYIESGLVVVAPVTKLNDTPWAFL 583

  Fly   570 QPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKA---LNLSSAVWFAWGVLLN 631
            :||:..:|.:......:|..|:::|:           |..::|.:.   ..:.:.:||::..:..
plant   584 RPFTPPMWAVTAAFFLIVGSVIWILE-----------HRINDEFRGPPRKQIVTILWFSFSTMFF 637

  Fly   632 SGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLTC 696
            |. .|.|..:....|| ::|....:||.:||||:|.:.|.:::..:.:.|:         :.|..
plant   638 SH-RENTVSTLGRAVL-LIWLFVVLIITSSYTASLTSILTVQQLNSPIRGV---------DTLIS 691

  Fly   697 ATVK-----GSSVDMYFRRQVEL--SNMYRTMEANNYATAEQAIQDVKKGKLMAFIWDSSRLEYE 754
            ::.:     ||..:.|...::.:  |.:........||.|      ::.|.:.|.:.:...::..
plant   692 SSGRVGFQVGSYAENYMIDELNIARSRLVPLGSPKEYAAA------LQNGTVAAIVDERPYVDLF 750

  Fly   755 ASKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQ-NCE 818
            .|:.|.....|:.|.|||:|....:.||....::.|||...|:|.::|:..:|:...:... |..
plant   751 LSEFCGFAIRGQEFTRSGWGFAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGS 815

  Fly   819 LFEKTPNTLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQKRLDIARHAADKWRGTI-- 881
            :.::....|.|::..|:|::.|:.....:.:...:::           .|..||.......|:  
plant   816 VSDEDSEQLKLRSFWGLFLVCGISCFIALFIYFFKIV-----------RDFFRHGKYDEEATVPS 869

  Fly   882 ---EKRKTIRASLA------------MQRQYNVGLN 902
               .:.|:::..||            |:|:.|..|:
plant   870 PESSRSKSLQTFLAYFDEKEDESKRRMKRKRNDDLS 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 97/470 (21%)
ANF_receptor 58..371 CDD:279440 82/375 (22%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 88/425 (21%)
HisJ 451..>558 CDD:223904 25/120 (21%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 28/141 (20%)
Lig_chan 575..838 CDD:278489 55/273 (20%)
CaM_bdg_C0 854..882 CDD:287524 4/32 (13%)
GLUR2NP_001320141.1 PBP1_GABAb_receptor_plant 31..422 CDD:380645 88/417 (21%)
GluR_Plant 466..804 CDD:270404 85/410 (21%)
Lig_chan 590..840 CDD:395014 56/277 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.010

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