DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and grid1a

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:1095 Identity:241/1095 - (22%)
Similarity:409/1095 - (37%) Gaps:246/1095 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 STYNIGGVLSNS--DSEEHFSTTIKHLNFDQQYV-PRKVTYYDKTIRMDKNPIKTVFNVCDKLIE 98
            |..:||.:...:  ..:|.|...|..|:.:...: ..::|:..|.|. ..||.:.|...|: |:.
Zfish    22 SIIHIGAIFEQNAIRDDEVFQLAISDLSLNDDILQSERITHSIKLIE-PNNPFQAVQEACE-LMN 84

  Fly    99 NRVYAVVVSHEQTSGDLSPAAVSYTSGFYSIPVI-------GISSRDAAFSDKNIHVSFLRTVPP 156
            ..:.|:|.|   |....:.|..|.|...: ||.:       |....:...:.......:.....|
Zfish    85 QGILALVSS---TGCAAANALQSLTDAMH-IPHLFIQRNGDGTPRAECQLNPSPDGERYTLAARP 145

  Fly   157 YYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQTTSQTYYD----DVDVRATVELIVEFE 217
            .....||.:.::|...:.|.|:.:.|:.|.|.:.|.....|:...|    .||...|......|.
Zfish   146 PVRLNDVMITLVSELRWHKFIVFYDSEYDVRGLRGFLDQASRMGLDVSLQQVDRNVTKVFSTLFS 210

  Fly   218 P-KLESFTEHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYNMTGEGHVWIVTEQALFSNNTPDG 281
            . ::|....:...::.|     ::..|...|||....|.|.|:..:...|:...:.:.....   
Zfish   211 TMRMEELNRYRDTLRRA-----ILLLSPRTAQVFIHQAVETNLASKDSHWVYANEEVSDTEI--- 267

  Fly   282 VLGLQLEHAHSDKG----------------------------------------------HIRDS 300
                 :|..||..|                                              ::.||
Zfish   268 -----MELVHSALGRMTVIRQIFPLWRDTNIRCMRNNHRISSLLCDPQEGYLQSLEVSSLYLYDS 327

  Fly   301 VYVLASAI-KEMISNETIAEAPKDC-GDSAVNWESGKRLFQYLKSRNITGETGQVAFDDNGDRIY 363
            |.:||:|. :::...:..:.|..:| ..|...|..|..:...::...|:|.||.:.|..||...:
Zfish   328 VLMLANAFYRKLEDRKWHSMASLNCMRKSTKPWNGGWSMLDTIQKGRISGLTGLMDFRSNGANSH 392

  Fly   364 AGYDVI--NIREQQKKHVVGKFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIE 426
            ..::::  :..|...|.|....::||.|.     :|.|.     ::.|...|:...| |:::|:.
Zfish   393 VQFEILGTSYSETFGKDVKRLATWDSDRG-----LNGSL-----RENRADHGMQGIT-LKVVTLL 446

  Fly   427 EKPFVYVRRMGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPD 491
            |:|||.|.    :....:|..                 .:|:.||:|..|:|.:.|.|::....|
Zfish   447 EEPFVMVA----ENILGQPKR-----------------YKGFSIDVLDALAKILGFKYEMYQVAD 490

  Fly   492 GQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILE 556
            .::         |:......|.|:||||:.:|||:.::.:||.|||...::|||.:....:.||.
Zfish   491 AKY---------GSPQTNGSWNGMIGELIGKRADVAISAITITPERENVVDFSKRYLDYSVGILM 546

  Fly   557 KKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRF------SPFGRFKLSHSDSNEEKA 615
            .|......:.|.|.||...:|..:..::.||.::::||.|.      :|.|    .|..::  ..
Zfish   547 TKTEERLNIFSLLAPFDLAVWACIAAAIPVVGVMVFLLRRVQSVRSQNPPG----PHQPAS--VT 605

  Fly   616 LNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLS 680
            .:..||:|..:|..:..| ||....|.:.|:....|..|.:|:.:||||||||:|.:.|....:.
Zfish   606 TSFQSAIWIVYGAFVQQG-GESFMSSMALRIAMGSWWLFTLIVCSSYTANLAAYLTVSRMDNAIR 669

  Fly   681 GINDARLRNTMENLTCATVKGSSVDMYFR--------RQVELSNMYRTM-----EANNYATAEQA 732
            ...|.   :....:...||:.|:|..|||        :....:.::||:     :.|:..:..:.
Zfish   670 TFQDL---SKQSEINYGTVRESAVFEYFRVKGTNPLEQDSTFAELWRTINKNQGQDNSVTSPAEG 731

  Fly   733 IQDVKKGKLMAFIWDSSRLEYEA--SKDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFH 795
            |:.||:.. .||:||.:.|||.|  ..||.||..|......|||:.||.|||:.|..:..||:..
Zfish   732 IRKVKRDP-YAFLWDMAVLEYAALTDDDCTLVVTGNGMSSKGYGLALQHGSPYRDLFSQKILDLQ 795

  Fly   796 ESGFMEKLDKQWIFHGHVQQNCELFEKT-PNTLG----LKNMAGVFILVGVGIAGGVGLIIIEVI 855
            |.|.::.|.::|   ...:..|:|.:.. |.|.|    |.:.||||.::..|:.....:..:|  
Zfish   796 EKGDLDILKQKW---WPRKGRCDLDKHAEPQTEGRALRLHSFAGVFCILAAGLLLACLVAALE-- 855

  Fly   856 YKKHQVKKQKRLDIARHAADKWRGTIEKRKTIRASLAMQRQYNVGLNSTHAPGTISLAVDKRRYP 920
                               ..|.|.       |...|..::...|.......|:::       |.
Zfish   856 -------------------SWWNGP-------RCQRAQPKEDTKGCALEMVSGSLA-------YN 887

  Fly   921 RLGQRLGPER-AWP--------------GDAADVLRIRRPYELGN------------------PG 952
            .:....|..| .||              |...:......|:|..:                  ||
Zfish   888 EIAPAAGCARDVWPERERDWEDTQAFYTGQRGESGAGSPPFEWADGGRSGTQAAARSASGDLCPG 952

  Fly   953 QSPKVMAANQPGMP------------MPMLGK-TRPQQSVLPPRYSPGYTSDVSH 994
            ......||..||.|            :|..|. .||:....||..|..:.|...|
Zfish   953 HGQHAAAAELPGGPERFSPWGPVRDLVPPGGSWGRPRARTEPPPPSQQFHSAALH 1007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 81/432 (19%)
ANF_receptor 58..371 CDD:279440 68/375 (18%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 116/421 (28%)
HisJ 451..>558 CDD:223904 29/106 (27%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 40/140 (29%)
Lig_chan 575..838 CDD:278489 83/288 (29%)
CaM_bdg_C0 854..882 CDD:287524 2/27 (7%)
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 78/422 (18%)
PBP2_iGluR_delta_1 437..809 CDD:270448 116/416 (28%)
DNA_pol3_gamma3 <915..1044 CDD:331207 19/93 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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