DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nmdar1 and grin1a

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_005161118.1 Gene:grin1a / 767745 ZFINID:ZDB-GENE-051202-1 Length:951 Species:Danio rerio


Alignment Length:980 Identity:439/980 - (44%)
Similarity:606/980 - (61%) Gaps:89/980 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 VLLVAPIDAAQRHTASDNPSTYNIGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYDKTIRMD 82
            :||:|.:.:.........|...|||.|||....|:.|...:...|  |.|...|......::...
Zfish     3 LLLLAALFSCSCVRGGCEPKIVNIGAVLSQKRYEQVFKDAVTQAN--QVYGRDKFKLTAISVTHK 65

  Fly    83 KNPIKTVFNVCDKLIENRVYAVVVSHEQTSGD-LSPAAVSYTSGFYSIPVIGISSRDAAFSDKNI 146
            .|.|:...:||:.||.::|||::|||...|.| |:|..||||:|||.|||:|:::|.:.:|||:|
Zfish    66 ANAIQMALSVCEDLISSQVYAILVSHPPQSNDHLTPTPVSYTAGFYRIPVVGLTTRMSIYSDKSI 130

  Fly   147 HVSFLRTVPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILGRFQT--------TSQTYYDD 203
            |:|||||||||.|||.||.:|:..|.:..:|:|.|.|.:|||...|.:|        ..:..|::
Zfish   131 HLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETLLEERETKNKKRNYEN 195

  Fly   204 VDVRA-------TVELIVEFEPKLESFTEHLIDMKTAQSRVYLMYASTEDAQVIFRDAGEYNMTG 261
            .|..:       ..|.:::|..: .:.|..|::.|..::||.::.||.|||..:::.|...||||
Zfish   196 QDQLSYDNKRGPKAEKVLQFNQE-TNLTALLLEAKELEARVIILSASEEDAAAVYKTARFLNMTG 259

  Fly   262 EGHVWIVTEQALFS---NNTPDGVLGLQLEHAHSDKGHIRDSVYVLASAIKEMISNETIAEAPKD 323
            .|:||:|.|:.:..   :..|||::||||.:..::..||.|:|.|:|.:|:|:...|.|.|.|:.
Zfish   260 SGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHISDAVAVVAQSIQELFEKENITEPPRG 324

  Fly   324 CGDSAVNWESG---KRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKHVVGKFSY 385
            |..:...|::|   ||:.  :.|:...|.||:|.|:|:|||.||.|.::|   .||..::....|
Zfish   325 CVGNTNIWKTGPLFKRVL--MSSKYPEGLTGRVEFNDDGDRKYAHYSILN---YQKSRLIQVGIY 384

  Fly   386 DSMRAKMRMRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVRRMGDDEFRCEPDERPC 450
            :..:..|.   ...:|||||.:..:|.|..:.|.|:::||.::|||||:.. ..|..|:.:..|.
Zfish   385 NGTQVVMN---KQRKIIWPGGETERPRGFQMSTRLKIVTIHQEPFVYVKPT-TLEGTCKEEYTPN 445

  Fly   451 PLF---------------NNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILR 500
            .:.               |.|.......||.|:||||||:|:..:||||::.|..||:||.....
Zfish   446 GVLIKKVICTGPNETIPGNTSGRPIVPQCCYGFCIDLLIKLALTMNFTYEVHLVADGKFGTQERV 510

  Fly   501 NNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPFKYQGITILEKKPSRSSTL 565
            ||:.    :|||.|::|||:...|||||||||||.|||:||||||||||||:|||.||....|||
Zfish   511 NNSN----KKEWNGMMGELLGGLADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTL 571

  Fly   566 VSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNEEKALNLSSAVWFAWGVLL 630
            .||:|||.:|||:||.:||||||::||||||||||||||: :|:..||.||.||||:||:|||||
Zfish   572 DSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKV-NSEEEEEDALTLSSAMWFSWGVLL 635

  Fly   631 NSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLT 695
            |||||||.|||||||:||||||||||||||||||||||||||:||:.:::||||.||||..:...
Zfish   636 NSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFI 700

  Fly   696 CATVKGSSVDMYFRRQVELSNMYRTMEANNYATAEQAIQDVKKGKLMAFIWDSSRLEYEASKDCE 760
            .||||.||||:|||||||||.|||.||.:||.:|.:|||.|:..||.||||||:.||:|||:.|:
Zfish   701 YATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD 765

  Fly   761 LVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHVQQNCELFEKTPN 825
            |||.||||.|||:|||::|.|||...|:||||..||:||||.|||.|:.:    |.|:.....|.
Zfish   766 LVTTGELFFRSGFGIGMRKDSPWKQNVSLAILSSHENGFMEDLDKTWVRY----QECDSRSNAPA 826

  Fly   826 TLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQKRLDIARHAADKWR---------GTI 881
            ||..:||||||:||..|||.|:.||.||:.||:|:..::|::.:|..|.:.||         .|.
Zfish   827 TLTFENMAGVFMLVAGGIAAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPSSSVETQ 891

  Fly   882 EKRKTIRASLAMQRQYNVGLNSTHAPGTISLAVDKRR------YPRLGQRLGPERAWPGDAADVL 940
            :.||:.||....:::.:....||    |::.::.:||      ||            |.|....|
Zfish   892 DDRKSGRADSDPKKKPSFRSIST----TLASSIKRRRSSKDTQYP------------PTDITGQL 940

  Fly   941 RIRRP 945
            .:..|
Zfish   941 NLSDP 945

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 143/408 (35%)
ANF_receptor 58..371 CDD:279440 123/334 (37%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 248/415 (60%)
HisJ 451..>558 CDD:223904 59/121 (49%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 100/134 (75%)
Lig_chan 575..838 CDD:278489 177/262 (68%)
CaM_bdg_C0 854..882 CDD:287524 9/36 (25%)
grin1aXP_005161118.1 PBP1_iGluR_NMDA_NR1 5..401 CDD:107374 142/406 (35%)
ANF_receptor 54..372 CDD:279440 120/320 (38%)
PBP2_iGluR_NMDA_Nr1 413..819 CDD:270437 248/415 (60%)
Lig_chan 581..844 CDD:278489 179/267 (67%)
CaM_bdg_C0 855..883 CDD:287524 8/27 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574586
Domainoid 1 1.000 356 1.000 Domainoid score I941
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7187
Inparanoid 1 1.050 763 1.000 Inparanoid score I528
OMA 1 1.010 - - QHG49285
OrthoDB 1 1.010 - - D108757at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - otm26608
orthoMCL 1 0.900 - - OOG6_107231
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4690
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1413.940

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