DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and grin3ba

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:XP_021323058.1 Gene:grin3ba / 566411 ZFINID:ZDB-GENE-070912-354 Length:1118 Species:Danio rerio


Alignment Length:1072 Identity:257/1072 - (23%)
Similarity:469/1072 - (43%) Gaps:178/1072 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TYNIGGVL---SNSDSEEHFSTTIKHL-NFDQQYVPRKVTYYDKTIR-MDKNPI----KTVFN-V 92
            |..:|.:|   ..|..:...:..:.|| .....::|     |:.::. :.:.|:    :::|. |
Zfish    43 TVRLGALLPTRQQSRIQGALNRALVHLRQSGNNFLP-----YNLSLEVLSREPLNGDPESMFRCV 102

  Fly    93 CDKLIENRVYAVVV---SHEQTSGDLSPAAVSYTSGFYSIPVIGISSRDAAFSDKN-IHVSFLRT 153
            |..::...|.||:.   |||:.      ..|.:.|.|..||.|.|..:......:| .|:..:..
Zfish   103 CQDIVVQGVSAVLAFPQSHEEL------IQVEFMSSFLEIPFISIIEQGEPLKTQNRFHLQMMTR 161

  Fly   154 VPPYYHQADVWLEMLSHFAYTKVIIIHSSDTDGRAIL-------GRFQTTSQT-----------Y 200
            :|| ...:|:.|          .:::......|.|.:       |..:...|.           .
Zfish   162 MPP-SGLSDLLL----------AVLLRGGWQGGAATVCPGGGNTGMLEELQQRGHLGLDGAHWHL 215

  Fly   201 YDDVDVRATVELIVEFEPKLESFTEHLIDMKTA-QSRVYLMYASTEDAQVIFRDAGEYNMTGEGH 264
            ::.:::....|.|.| :..:|..::.|....:| .|.|.|..:..|....:...|.:.:.|....
Zfish   216 WETLNLSRLEENISE-DKVMELLSQLLSRTPSAPASSVVLFGSDPECTATVLHCAHQLSGTLPPM 279

  Fly   265 VWI----VTEQALFSNNTPDGVLGLQLEHAHSDKGHIRDSVYVLASAI--KEMISNE-TIAEAPK 322
            .||    ::..:|.|..:|.|::.....:......:|||::.::..|:  ..|:..: .:.:...
Zfish   280 HWIMGYPLSLDSLHSIGSPLGLMAYGEVNRKPLNFYIRDTLQLIGRAVYAATMVRPDLALIQNMV 344

  Fly   323 DCGDSAVNWE---SGKRLFQYLKSRNITGETGQVAFDDNGDRIYAGYDVINIREQQKKHV----- 379
            :|.|.....|   ||:.|.::|.:.:.||.||.|..:.:..|:..         .|:.|:     
Zfish   345 NCFDKPNKHELPSSGQYLARFLSNTSFTGLTGPVRVERSFSRVLT---------SQRFHIWSLQR 400

  Fly   380 --VGKFSYDSMRAKMRMRIN-DSEIIWPG---KQRRKPEGIMI-----------PTHLRLLTIEE 427
              :|:.|:.::.:....|:. :.:.:|||   .||....||.:           .:.||::|:.|
Zfish   401 DPLGQPSWVTVASWQSGRLELEEQGLWP
GVTQHQREDGPGIRLGGRWQAGLPVAGSRLRVVTLVE 465

  Fly   428 KPFVYVRRMGDDEFRCEPDERPC--PLFNNSDATANEF-----------------CCRGYCIDLL 473
            .|||:.|.: |:|.:| |..:.|  |..|||:.....|                 ||.|||||||
Zfish   466 HPFVFTREV-DEEGQC-PAGQLCLDPQTNNSEVLNQLFRELEQTNSSSLPTDMRKCCYGYCIDLL 528

  Fly   474 IELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERA 538
            .:|::.::|.:||.:..||::|.:     .|.     .|:||:|:|::..|||.|...:||..|:
Zfish   529 EKLAEDMHFEFDLYIVGDGKYGAW-----KGG-----RWSGLVGDLLSGVADMAVTSFSINSARS 583

  Fly   539 EYIEFSKPFKYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRF 603
            ..|:|:.||....:.||.:....::.:.:|:.|...::|:.:.|::|:.||.:.|.:..||||  
Zfish   584 RVIDFTSPFFSTSLGILVRSKDTAAPIGAFMWPLHWSMWVGIFVALHITALFITLYEWNSPFG-- 646

  Fly   604 KLSHSDSNEEKALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAA 668
             ::....|..:..:.|||:...:.:|....:...||:.::.|.|..:||.|.:::::||||||||
Zfish   647 -MTPHGRNRIRVFSYSSALNLCYAILFGRTVASKTPKCWTGRFLMNLWAIFCLLVLSSYTANLAA 710

  Fly   669 FLVLERPKTKLSGINDARLRNTMENLTCATVKGSSVDMYFRRQVELSNMYRTMEANNYATAEQAI 733
            .:|.|:...::|||:|.:|.:........||:.||.:.|.::  ....|:..|...|..|....:
Zfish   711 VMVGEKTFEEVSGIHDVKLHHPSLGFRFGTVRESSAEDYVKK--SFPEMHEYMRRFNKPTTPDGV 773

  Fly   734 QDVKKG--KLMAFIWDSSRLEYEAS--KDCELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEF 794
            ..:|..  :|.|||.|.:.|:||.|  .||:|:|.|:.|...||||||.:.||.|..|:..:..:
Zfish   774 STLKTDPPQLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPQNSPLTRNVSEYVSRY 838

  Fly   795 HESGFMEKLDKQWIFHGHVQQNCELFEKTPN-TLGLKNMAGVFILVGVGIAGGVGLIIIEVIYKK 858
            ...|:|:.|..:|  :..|.....:|..|.. .:|:::.:|:|:|:.||:||.:..::.|..:.:
Zfish   839 KSDGYMDMLHDKW--Y
KVVPCGKRVFAVTETLQMGIQHFSGLFVLLCVGVAGALLTLLGEHAFFR 901

  Fly   859 H---QVKKQKRLDIARHAADKWR-----GTIEKRKTIRAS------LAMQRQYNVGL---NSTHA 906
            .   .::.|:|.....|.:.|..     |..::||:...|      |.:....|:..   :|:..
Zfish   902 FILPHLRHQQRFKYWLHTSQKIHRAINMGCDDERKSEAESSDRCPTLCLSENCNLHRLPPSSSSP 966

  Fly   907 PGTISLAVDKRRYPRLGQRLGPERAWPGDAADV-LRIRRPYELGNP------------GQSPKVM 958
            |.|.|.:....::.....:.|.|.......... |.....|:|..|            |..|..:
Zfish   967 PSTSSTSTTTTKWNNQSVKAGREAKEQNKRVHFNLETLNSYQLQAPPHGAERGRRGLVGSPPTQL 1031

  Fly   959 AANQPGMPMPMLGKTRPQQSVLPPRYSPGYTS 990
            .:|  |.|.|.|      ..||.|....|:::
Zfish  1032 CSN--GGPNPSL------SLVLSPLTCSGHST 1055

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 77/417 (18%)
ANF_receptor 58..371 CDD:279440 67/352 (19%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 132/423 (31%)
HisJ 451..>558 CDD:223904 40/123 (33%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 36/134 (27%)
Lig_chan 575..838 CDD:278489 82/267 (31%)
CaM_bdg_C0 854..882 CDD:287524 5/35 (14%)
grin3baXP_021323058.1 Periplasmic_Binding_Protein_Type_1 26..428 CDD:324556 76/416 (18%)
PBP2_iGluR_NMDA_Nr3 457..852 CDD:270438 131/413 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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