DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and Ir76b

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster


Alignment Length:725 Identity:156/725 - (21%)
Similarity:253/725 - (34%) Gaps:203/725 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   345 NITGETGQVAFDDNG------------DRIYAGYD----VINIREQQKKHVVGKFSYDSMRAKMR 393
            |.:..|..:...:||            |...||:|    |..:....:|           :.|:|
  Fly    21 NDSPPTNLIQMGENGTLSPVTELPMDVDASEAGFDADAPVETLETINRK-----------KPKLR 74

  Fly   394 MRINDSEIIWPGKQRRKPEGIMIPTHLRLLTIEEKPFVYVR------RMGDDEFRCEPDERPCPL 452
            ..::     |.|.:           |||:.|:|:.|..|..      |:|               
  Fly    75 EMLD-----WIGGK-----------HLRIATLEDFPLSYTEVLENGTRVG--------------- 108

  Fly   453 FNNSDATANEFCCRGYCIDLLIELSKRINFTYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIG 517
                         .|....::..|.|:.||||::.:..|...|.            ..::...:.
  Fly   109 -------------HGVSFQIIDFLKKKFNFTYEVVVPQDNIIGS------------PSDFDRSLI 148

  Fly   518 ELVN-ERADMIVAPLTINPERAEYIEFSKPFKYQGITIL-EKKPSRSSTLVSFLQPFSNTLWILV 580
            |:|| ...|:..|.:....::..::.:|.....:|..|: .::|..|::....|.||...:|||:
  Fly   149 EMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILI 213

  Fly   581 MVSVHVVALVLYLL----DRFSPFGRFKLSHSDSNEEKALNLSSAVWFAWGVLLNSGIGEGTPRS 641
            :||:..|..::|.|    :|.:..|          ::...:|....||.:|.|:..| ...:|.:
  Fly   214 LVSLLAVGPIIYALIILRNRLTGDG----------QQTPYSLGHCAWFVYGALMKQG-STLSPIA 267

  Fly   642 FSARVLGMVWAGFAMIIVASYTANLAAFLVLERPKTKLSGINDARLRNTMENLTCATVKGSSVDM 706
            .|.|:|...|..|..|:.:.|||||.|||.|.:.....:.:||...:|.    ...:::|..|:.
  Fly   268 DSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNK----HFVSMRGGGVEY 328

  Fly   707 YFRRQVELSNMYRTMEANNYATAEQAIQDV--------KKGKLMAFIWDSSRLEYEASKD----- 758
            ..|...|..:|...|..||||.......|.        |.|  ..|:.|...:.....:|     
  Fly   329 AIRTTNESLSMLNRMIQNNYAVFSDETNDTYNLQNYVEKNG--YVFVRDRPAINIMLYRDYLYRK 391

  Fly   759 ----------CELVTAGELFGRSGYGIGLQKGSPWTDAVTLAILEFHESGFMEKLDKQWIFHGHV 813
                      |....|.|.|.:.........||..:......:|...|||.::.|.|        
  Fly   392 TVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSK-------- 448

  Fly   814 QQNCELFEKTPNTLG-----LKN---MAGVFILVGVGIAGGVGLIIIEVIYKKHQVKKQKRLDIA 870
             :|....|..|..||     |:|   |...:|:: .|.|..:.:...|:::         |...:
  Fly   449 -RNLPSAEICPQDLGGTERQLRNGDLMMTYYIML-AGFATALAVFSTELMF---------RYVNS 502

  Fly   871 RHAADKWR----GTIEKRKTIRAS--LAMQRQYNVGLN-----STHAPGTISLAVDKRRYPRLGQ 924
            |..|:||.    |.....:::..|  |...|:.|.|..     |||                 ||
  Fly   503 RQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLNSGHGQLLGASTH-----------------GQ 550

  Fly   925 RLGPERAWP-----GDAADVL-RIRRPYELGNP-GQSPKVMAANQPGMPMPMLGK-----TRPQ- 976
            .:.|...:.     |...|.| |.|||...||. |....:...::.|:...:.|:     ..|. 
  Fly   551 NVTPPPPYQSIFNGGSHGDPLNRWRRPLANGNALGNGVLLGGDSEGGVRRLINGRDYMVFRNPNG 615

  Fly   977 QSVLPPRYSP 986
            ||.|.|..||
  Fly   616 QSQLVPVRSP 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 13/75 (17%)
ANF_receptor 58..371 CDD:279440 9/41 (22%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 95/435 (22%)
HisJ 451..>558 CDD:223904 17/108 (16%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 33/140 (24%)
Lig_chan 575..838 CDD:278489 71/297 (24%)
CaM_bdg_C0 854..882 CDD:287524 6/31 (19%)
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 89/421 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462914
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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