DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and Ir76a

DIOPT Version :10

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_001097647.3 Gene:Ir76a / 40157 FlyBaseID:FBgn0260874 Length:646 Species:Drosophila melanogaster


Alignment Length:785 Identity:157/785 - (20%)
Similarity:258/785 - (32%) Gaps:269/785 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 FSDKNI-----HVSF---LRTVPPY------YHQADVWLEMLSHFAYTKVIIIHSSDTDGRAILG 191
            |:|.:.     |.:|   |.||.|.      :|:   |........|.  ..|...:.:|:.|  
  Fly    23 FADSHATCIFWHPAFDFRLETVHPMPLIIMDWHR---WANRSDQDVYD--YKIKEDEFEGKGI-- 80

  Fly   192 RFQTTSQTYYDDVDVRATV-------ELIVEFEPKLESFTEHLID------MKTAQSRVYLMYAS 243
                    .|:|..:|.||       |..:.|:.::..|..:...      .::.::|...:|..
  Fly    81 --------PYNDWTLRLTVAIERSHCETFIAFQEQIPEFARYFYHASIYSIWRSLRNRFMFVYTK 137

  Fly   244 TEDAQVIFRDAGEYNMTG-----EGHVWIVTEQALFS----------------NNTPDGVLGLQL 287
            .      |.|..:..::|     :.::.::|.|.|.|                |..|:.|     
  Fly   138 E------FEDKKDSYLSGYIFQDQPNILVITSQYLNSSTFEIKTNRFVGPRNFNKNPEPV----- 191

  Fly   288 EHAHSDKGHIRDSVYVLASAIKEMISNETIAEAPKDCGDSAVNWESGKRLFQYLKSRNITGETGQ 352
                        ..|:|...               |...:...||:...:..  |.||:.|    
  Fly   192 ------------EFYILQRF---------------DAKGTKATWETQSAMSS--KMRNLKG---- 223

  Fly   353 VAFDDNGDRIYAGYDVINIREQQKKHVVGKFSYDSMRAKMRMRINDSEIIWPGKQRRKPEGIMIP 417
                                   ::.|:|.|.|                        ||      
  Fly   224 -----------------------REVVIGIFDY------------------------KP------ 235

  Fly   418 THLRLLTIEEKPFVYVRRMGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSKRINF 482
              ..||..|:.|..|.|.|                 |.:|.|.:     |..|.|::...:..|.
  Fly   236 --FMLLDYEKPPLYYDRFM-----------------NTTDVTID-----GTDIQLMLIFCELYNC 276

  Fly   483 TYDLALSPDGQFGHYILRNNTGAMTLRKEWTGLIGELVNERADMIVAPLTINPERAEYIEFSKPF 547
            |..:..|....:|...| |.:|        .||:|.:::.|.|..|..:.:..|..||::.:...
  Fly   277 TIQVDTSEPYDWGDIYL-NASG--------YGLVGMILDRRNDYGVGGMYLWYEAYEYMDMTHFL 332

  Fly   548 KYQGITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRFKLSHSDSNE 612
            ...|:|.|...|:|..:....|:||...||:.||:.:.:.:|.|.:..|:        .||    
  Fly   333 GRSGVTCLVPAPNRLISWTLLLRPFQFVLWMCVMLCLLLESLALGITRRW--------EHS---- 385

  Fly   613 EKALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAM--IIVAS----------YTAN 665
                  |.|...:|...|..|. ..|.:.|..:....|.:.:|:  ::|||          |:..
  Fly   386 ------SVAAGNSWISSLRFGC-ISTLKLFVNQSTNYVTSSYALRTVLVASYMIDIILTTVYSGG 443

  Fly   666 LAAFLVLERPKTKLSGINDARLRNTMENLT--------CATVKGSSVDMYFRRQVELSNMYRTME 722
            |||.|.|    ..|....|:|.|.....|.        ..|:...|.|...   :.|...||..:
  Fly   444 LAAILTL----PTLEEAADSRQRLFDHKLIWTGTSQAWITTIDERSADPVL---LGLMEHYRVYD 501

  Fly   723 AN---NYATAEQ---AIQDVKKGKLMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIG-LQKG 780
            ||   .::..||   .::.::.|.|    .::..:|.:|.|..:|:.....|   .:.:. :.:.
  Fly   502 ANLISAFSHTEQMGFVVERLQFGHL----GNTELIENDALKRLKLMVDDIYF---AFTVAFVPRL 559

  Fly   781 SPWTDAVTLAILEFHESGFMEKLDKQW-------IFHGHVQQNCELFEKT-----PNTLGLKNMA 833
            .|..:|....||.:|.|||    ||.|       ..:.|.|......|||     |..||:.|..
  Fly   560 WPHLNAYNDFILAWHSSGF----DKFWEWKIAAEYMNAHRQNRIVASEKTNLDIGPVKLGIDNFI 620

  Fly   834 GVFIL 838
            |:.:|
  Fly   621 GLILL 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 37..405 CDD:380602 47/311 (15%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 99/434 (23%)
CaM_bdg_C0 854..882 CDD:402271
Ir76aNP_001097647.3 None
Blue background indicates that the domain is not in the aligned region.

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