DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmdar1 and GluRIIA

DIOPT Version :9

Sequence 1:NP_730940.1 Gene:Nmdar1 / 40665 FlyBaseID:FBgn0010399 Length:997 Species:Drosophila melanogaster
Sequence 2:NP_523484.2 Gene:GluRIIA / 33788 FlyBaseID:FBgn0004620 Length:907 Species:Drosophila melanogaster


Alignment Length:928 Identity:196/928 - (21%)
Similarity:384/928 - (41%) Gaps:195/928 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 DNPSTYNIGGVLSNSDSEEHFSTTIKHLNFDQQYVPRKVTYYD------KTIR--MDKNPIKTVF 90
            |:.:...:|.:...::.|       ..|:|||.:  |:|....      .||:  |..|....:.
  Fly    27 DDRNEITVGAIFYENEKE-------IELSFDQAF--REVNNMKFSELRFVTIKRYMPTNDSFLLQ 82

  Fly    91 NVCDKLIENRVYAVVVSHEQTSGDLSPAAVSYTSGFYSIPVIGISSR-DAAFSDKNIHVSFLRTV 154
            .:..:||.|.|.|:.....:.:.|: .|.::..:|   ||.|....: :|...::..|...:...
  Fly    83 QITCELISNGVAAIFGPSSKAASDI-VAQIANATG---IPHIEYDLKLEATRQEQLNHQMSINVA 143

  Fly   155 PPYYHQADVWLEML-SHFAYTKVIIIH------------------SSD----------TDGRAIL 190
            |.....:..:.|:: |::.:....:|:                  :||          .|...||
  Fly   144 PSLSVLSRAYFEIIKSNYEWRTFTLIYETPEGLARLQDLMNIQALNSDYVKLRNLADYADDYRIL 208

  Fly   191 GRFQTTSQTYYDDVDVRATVELIVEFEPK-LESFTEHLIDMKTAQ--SRVYLMYASTEDAQVIFR 252
              ::.|.:|:::.       .:|::.||| |:...:..||.|...  ...:|.:..|.::.:  |
  Fly   209 --WKETDETFHEQ-------RIILDCEPKTLKELLKVSIDFKLQGPFRNWFLTHLDTHNSGL--R 262

  Fly   253 DAGEYNMTGEGHVWIVTEQALFSN---------NTPDGVLGLQ-----LEHAHSDKGHIRDSVYV 303
            |.  ||...:.::..|..:.:.:|         ...|.:||.|     |         |.|:|.:
  Fly   263 DI--YNEDFKANITSVRLKVVDANPFERKKTRLTKVDQILGNQTMLPIL---------IYDAVVL 316

  Fly   304 LASAIKEMISNETIAEAP-KDCGDSAVNWESGKRLFQYLKSRNITG-----ETGQVAFDDNGDRI 362
            .||:.:.:|:.......| :.||.|: .|..|..:...:|:.:...     :|..:..|:.|.||
  Fly   317 FASSARNVIAAMQPFHPPNRHCGSSS-PWMLGAFIVNEMKTISEDDVEPHFKTENMKLDEYGQRI 380

  Fly   363 YAGYDVINIREQQKKHVVGKFSYDSMRAKMRMRINDSEIIW-PGKQRRKPEGIMIPTHLRLLTIE 426
            :...::                       .:..:|:..::| |....:|          |||.:|
  Fly   381 HFNLEI-----------------------YKPTVNEPMMVWTPDNGIKK----------RLLNLE 412

  Fly   427 -------------EKPFVYVRRMGDDEFRCEPDERPCPLFNNSDATANEFCCRGYCIDLLIELSK 478
                         .|.:..|....:..|..:.|...   |...:.      ..||.:||:.:||:
  Fly   413 LESAGTTQDFSEQRKVYTVVTHYEEPYFMMKEDHEN---FRGREK------YEGYAVDLISKLSE 468

  Fly   479 RINFTYDLALSPDGQFGHYILRNNTGAMTLR-KEWTGLIGELVNERADMIVAPLTINPERAEYIE 542
            .:.|.|:           :::.|..|..... |:|.|:|.:|::..|.:.|..|||...|...::
  Fly   469 LMEFDYE-----------FMIVNGNGKYNPETKQWDGIIRKLIDHHAQIGVCDLTITQMRRSVVD 522

  Fly   543 FSKPFKYQGITILE-KKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFS-------- 598
            |:.||...||:||. |.|.......:||:||:..:||.::.:..::.|....:.|.|        
  Fly   523 FTVPFMQLGISILHYKSPPEPKNQFAFLEPFAVEVWIYMIFAQLIMTLAFVFIARLSYREWLPPN 587

  Fly   599 PFGRFKLSHSDSNE-EKALNLSSAVWFAWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASY 662
            |      :..|.:| |...|::::.|...|.::..|. :..||....|:|..:|..||::::::|
  Fly   588 P------AIQDPDELENIWNVNNSTWLMVGSIMQQGC-DILPRGPHMRILTGMWWFFALMMLSTY 645

  Fly   663 TANLAAFLVLERPKTKLSGINDARLRNTMENLTCATVKGSSVDMYF--RRQVELSNMYRTMEANN 725
            ||||||||...:.::.:..:.|.   ...:.:...:::|.|..::|  ....:....:..|:..|
  Fly   646 TANLAAFLTSNKWQSSIKSLQDL---IEQDKVHFGSMRGGSTSLFFSESNDTDYQRAWNQMKDFN 707

  Fly   726 ----YATAEQAIQDVKKGK-LMAFIWDSSRLEYEASKDCELVTAGELFGRSGYGIGLQKGSPWTD 785
                .:|.::.:..|:|.| ..||:.:::.|.|...::|:|...||..|...||:.:..||.:..
  Fly   708 PSAFTSTNKEGVARVRKEKGGYAFLMETTSLTYNIERNCDLTQIGEQIGEKHYGLAVPLGSDYRT 772

  Fly   786 AVTLAILEFHESGFMEKLDKQWIFHGHVQQNCELF-EKTPNTLGLKNMAGVFILVGVGIAGGVGL 849
            .::::||:..|.|.::|:..:|..:.:|  .|:.: |...:.|.:..:.|||:::..|:..||.|
  Fly   773 NLSVSILQLSERGELQKMKNKWWKNHNV--TCDSYHEVDGDELSIIELGGVFLVLAGGVLIGVIL 835

  Fly   850 IIIEVIYKKHQVKKQKRL 867
            .|.|.::....|..::|:
  Fly   836 GIFEFLWNVQNVAVEERV 853

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmdar1NP_730940.1 PBP1_iGluR_NMDA_NR1 12..405 CDD:107374 78/432 (18%)
ANF_receptor 58..371 CDD:279440 73/373 (20%)
PBP2_iGluR_NMDA_Nr1 417..818 CDD:270437 102/431 (24%)
HisJ 451..>558 CDD:223904 29/108 (27%)
Periplasmic_Binding_Protein_Type_2 <516..651 CDD:304360 38/144 (26%)
Lig_chan 575..838 CDD:278489 65/279 (23%)
CaM_bdg_C0 854..882 CDD:287524 2/14 (14%)
GluRIIANP_523484.2 PBP1_iGluR_Kainate 33..404 CDD:107377 78/429 (18%)
ANF_receptor 46..386 CDD:279440 73/368 (20%)
PBP2_iGluR_Kainate 426..796 CDD:270432 97/399 (24%)
Lig_chan 556..828 CDD:278489 65/283 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462673
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.940

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